Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3230 ATGACAAGAAGCTCCTCCCTATCCCCCTTGTATGACGAGGATTTTCTTGAGCTAGTATGGGAAAATGGTCAAATTCTTGTCCGAGGAGGTTCATCATCAAATAGAACACAAAATAATGTCAGCATTAGAGGAAGAACAAGGTTAAGCACGGTATACTCACTTTTGGATAAGTTCCAACCTCACAAGGAAACTGACCTGAGATCTTCATCACATCAAGGCAATGGCCAACATTCCTGCCAGATTGATCTGCGATTCTCCCAAAGCAAGAACTCCAGCAAGCTTCAAGTTGCAAACTCATCAGCAGAAGACCCTAATAAGCTCACTGGGAATAATAATAACCAGTTATGCACATATTCCCCATCACAACAGTGCTCGCCTTCATCTCCTGTCAAGAAACCAAGAGTGGATTCAAGCCAATTAGCACCAGCACCAGCAACAACAAAGTCAAACACACAGAACCTGGGGTGTGAACAGAGAACAGGAAAGGTGAACTTCTCAAACTTCTTGATACCTGCACTGTGCCTCAGATCTTCTCATCATCAGGAAAACGCTGCAAACCAGCCAACAAGAAATGCATGTCCATCAGCAAGAGAGGAAGAGATTGAAGCGGGCAAGGCCGAGAAAATACCAGTTGCTGCTGCTGCTAGTATAAGCAAAGTTCCTGAAGCTTTTGGTCGTAATAACAGTCCCCTTAGAATTCAAGGATCTCATCATGTTCAACATTACAACGAAACCCCAAGCTCAGCAGCACCTAAGGCAAAGGGAATAGCTAGTGATACTGGCTTTTGTAATGAACCCTTGCCAGCTTGTTCTTCTGTGTGCTCTCTTGTAGCCTCAAATCACCCAAAAATTTGTATCAGGAAACATGAATACACCACTGATGACTCCACATATTTAAGTGATAATGATGAAGAAACAGAAGATGTGGTGAAGGAAACGCCACCTTGGGAGGTTGCTAGAGTCAAGAGAAGGAGGAATGCCGAGATTCCCAATTTATCTGAAAGGAACCGAAGAGATAACATCAACAAGAAGATTCGTACGTTGAAAGAGCTCATACCCAATTGCAATAAGGTGGATAAGGCTTCAACACTTGATGATGCCATTGACTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGTAGTGGACTTTGTAATCCACTGATGATGTTACCAGCTGCAGTGAATGCACCACCACATTTACCACCACAGTTAATGGGAGCTGGAATGTGTTTCAGGCCTCCCGCAGGCACAGGCTTCCCTTGTAGCCCACCACAGTTCCCTATTCCACCACTCTCTCCAATCACAGACACCACACTACTTAACATGTTTGGTTTCTCCAACCACATGAGACCCATGCCACCAATTTCTCATCATCATGCACCTTTCATTCCTATGAATAATGGGAACTCCCCACCTACTCCACCACTCATGCCAGCCACCACCACCACACCCACCAACCTGGCAGAACATCTAGCTAATTCTGCCTCCCTAGATGATCTTCATGTAAATGCTGAATATGAAGCAGCAATAATGCAAGCAACGAATCAGGTTTCCCTTCACCCCCACAGTAATAGTGGCTATTCCTTTTATTTTCCCACAGGAAAACAGGAAAATAGAGATATTATCGGACAGGAAGGGACAACCAGAATAATGTAA 1668 0.4412 MTRSSSLSPLYDEDFLELVWENGQILVRGGSSSNRTQNNVSIRGRTRLSTVYSLLDKFQPHKETDLRSSSHQGNGQHSCQIDLRFSQSKNSSKLQVANSSAEDPNKLTGNNNNQLCTYSPSQQCSPSSPVKKPRVDSSQLAPAPATTKSNTQNLGCEQRTGKVNFSNFLIPALCLRSSHHQENAANQPTRNACPSAREEEIEAGKAEKIPVAAAASISKVPEAFGRNNSPLRIQGSHHVQHYNETPSSAAPKAKGIASDTGFCNEPLPACSSVCSLVASNHPKICIRKHEYTTDDSTYLSDNDEETEDVVKETPPWEVARVKRRRNAEIPNLSERNRRDNINKKIRTLKELIPNCNKVDKASTLDDAIDYLKTLKLQLQIMSMGSGLCNPLMMLPAAVNAPPHLPPQLMGAGMCFRPPAGTGFPCSPPQFPIPPLSPITDTTLLNMFGFSNHMRPMPPISHHHAPFIPMNNGNSPPTPPLMPATTTTPTNLAEHLANSASLDDLHVNAEYEAAIMQATNQVSLHPHSNSGYSFYFPTGKQENRDIIGQEGTTRIM* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3230 555 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Dod01g3230 555 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 392 IPR036638 GO:0046983
Dod01g3230 555 PANTHER TRANSCRIPTION FACTOR PIF3 1 500 IPR044273 GO:0003700|GO:0006355
Dod01g3230 555 SMART finulus 331 380 IPR011598 GO:0046983
Dod01g3230 555 MobiDBLite consensus disorder prediction 90 154 - -
Dod01g3230 555 Pfam Helix-loop-helix DNA-binding domain 331 374 IPR011598 GO:0046983
Dod01g3230 555 Gene3D - 321 382 IPR036638 GO:0046983
Dod01g3230 555 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 500 - -
Dod01g3230 555 CDD bHLH_AtPIF_like 325 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3230 Dod-Chr1 73247694 73250565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3230 243 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 44.500 9.16e-30 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g3230 HLH 8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3230 K12126 - gmx:100784724 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3230 01 73247694 73250565 Dod01g3230 01 73247694 73250565 ECH
Dod01g3230 01 73247694 73250565 Dod06g1929 06 28450709 28454935 PCT