Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3229 ATGTTCGCTGCTGTTCCCTTATCCATCACTCCGCCGCCCTACACTCTGCCCCGCTGGACTGCATGGTGGTTAGTGGCGGTCTCAGCGGCCTCTCCGTCCTCCAACTCCAACCGCACAGTTCCAAATAATGTGATTCTGAGTGAGGCCTCACACCGTGTTGGTGGCAACATCGCCACCGTCGAGAGAGACGGCTTTCTCTGGGAACAAGGTCCTAACAGCTTTCAGCCCTCCCGTCCCATGCTCTCCTTGCTGTGTGGGTTGGAGGATGAACTTGTTGTGGGTGATCCCAATGCTCCTCGTTTTGTATTATGGAATGGGAAGCTGAGGCCAGTACCTTCTAAACCATCTGATTTGCCTTTCTTTGACTTGATGAGCATTGGTGGCAAACTCAGGGCTGGATTTGGCGAACTTGGCCTTCGTCGTCGTCCTCCTCCTCCTCCATGCTTTGATGAAGGTGACAGGGTCATGAGGAATCGGTTGAAGAGTCTGTGCCGTCGCAACCTTGGTGATGAGGTCTTTGAACGCTTGATAGAGCCTTCTTGTTCTGCTGAGAGTATCTATGCAGGTGATCCTTCAAAATTAAGTATGGAAGCAGCATTTGGAAAAGTTTGGAAGCTGCAGCAAATTGGAGGTAGCATTATTGGTGGCACTGTCAAAGCATTACAGGAGAGAAATAAAGCTCCTAAACCGCCTCGAGATCCTAATCATCTTGCAGGCGTCTGCCAAAGCCAAAGGGCTAAACTGTTGGATCTTTCTGGAAAGGGCTTACCATGTTGGCAGAGGCAATCTCTGCAAGGTACTCTCTCTATGATGCTTTATGCTAATGTTCCAGTTGCTTCAGCAATATTTTTAGGATTGATGATCTTAGTGAATTGTGTTCTTGTTGGCAGCAATAGTGGAGAGTACCGTTTGACATATGAAACGCCAGAAGGAGTGGTTTCTTTGCAGAGCAGAACTGTTGTCATGACCATTCCTTCCTATGTTGCTAGCACTGTTGCTGCGCCCTCTGCTGCTGCTGCAGATGCAGTTTCAAAGATTTATTACCCCCCAGTTGCTGCCATTGCAATATCCTATCCAAAAGAAGCTATTCGAACAGAATGCTTGATAAAGGGTGAACTGAAGGGGTTTGGTCAATTGCATCCACGCACTCAAGGACTGGAAACTTTAGGAACAATATATAGCTCATCACTTTTCCCTAATCGGGCTCCAACTGGACAGGTTCTACTCTTGAATTTCATTGGAGGGGCTACCAATCCTGGAATCTTATCAAAGATGGATAGTGAACTTGCTGGAGCAGCTGATCGAGACTTGAGAAAAATCCTTATAAACCCAAATGCCAAGGATCCTGTTGTATTGGGTGTGAGACTATGGCCTAAAGCTATTCCACAGTTTTTAATTGGCCATTTTGATCTACTAGATGTTGCCAAGGCTGCACTCAAAGATCCTGGGTGTGAGGGGCTGTTCCTTGGGGAAAACTATGTGTCTGGTGTTGCCTTGGGAGCATGTGTTGAGGGAGCCTACGAGATAGCAGGCAAAGTTAATGACTTCATCTCACACTTAGCCTCTCTCTTGCGGATCCAGAAGATACAGTGGTTGGTGCTCGACTTGAAAATCAAGTTCTGGCTCAACACCCTGAAAGCCGCCGTCGGAACTCTGTTCCTCGCCGAGAGGACTCACTGTGACCTCGTAGGGAGGAAGAGCTTCGCCGAGGTTTGCAGAGACGGCGCGACAAAGGGGTGGATGGAGCCACTTGTTCGAACTACACAATGGGAAAAGCCACCTAGTTCTTCCTCCTCGTCCTTTAGCAGCAGCAACAAAAACCACCACCACCGCCACCTAGTTACTTCAACTGCATCCTCTCTCGCACACCTCAACTCACATGAACTCCCCACAGATCTTAGCCTTGGACTCGGCATCCCCGCCGCTCAACATGTTGGTTCTTCCATTTCAAGGGGGCATTGGCAACACCAAATCCAGCAACCAGGTGGTGAAGCGAATGATTGCAGCGACCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATAGGCAGAAAACTCAACATATTGGCTCATGAAAGCTACCATGAGCTAGTGAAGACTCTTGAGCACATGTTCGACACTACCATTCTCTGTAATGTCTCTCTATTGCTCTCAGTTATATATGCTTTTGTTTTTTCGGGTCTCACAGGCGAAGTAGTAACAATGGAATTAATGTGCGTGGTACTGTACTGTGTTTGGAACAGGGGGGACAGAGATGGACGGAGTGCAACCAGAGAGATGCCACGTGCTGACATATGA 2307 0.4824 MFAAVPLSITPPPYTLPRWTAWWLVAVSAASPSSNSNRTVPNNVILSEASHRVGGNIATVERDGFLWEQGPNSFQPSRPMLSLLCGLEDELVVGDPNAPRFVLWNGKLRPVPSKPSDLPFFDLMSIGGKLRAGFGELGLRRRPPPPPCFDEGDRVMRNRLKSLCRRNLGDEVFERLIEPSCSAESIYAGDPSKLSMEAAFGKVWKLQQIGGSIIGGTVKALQERNKAPKPPRDPNHLAGVCQSQRAKLLDLSGKGLPCWQRQSLQGTLSMMLYANVPVASAIFLGLMILVNCVLVGSNSGEYRLTYETPEGVVSLQSRTVVMTIPSYVASTVAAPSAAAADAVSKIYYPPVAAIAISYPKEAIRTECLIKGELKGFGQLHPRTQGLETLGTIYSSSLFPNRAPTGQVLLLNFIGGATNPGILSKMDSELAGAADRDLRKILINPNAKDPVVLGVRLWPKAIPQFLIGHFDLLDVAKAALKDPGCEGLFLGENYVSGVALGACVEGAYEIAGKVNDFISHLASLLRIQKIQWLVLDLKIKFWLNTLKAAVGTLFLAERTHCDLVGRKSFAEVCRDGATKGWMEPLVRTTQWEKPPSSSSSSFSSSNKNHHHRHLVTSTASSLAHLNSHELPTDLSLGLGIPAAQHVGSSISRGHWQHQIQQPGGEANDCSDHSSFFVKVYMEGIPIGRKLNILAHESYHELVKTLEHMFDTTILCNVSLLLSVIYAFVFSGLTGEVVTMELMCVVLYCVWNRGDRDGRSATREMPRADI* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3229 768 MobiDBLite consensus disorder prediction 583 609 - -
Dod01g3229 768 MobiDBLite consensus disorder prediction 589 604 - -
Dod01g3229 768 Gene3D protoporphyrinogen ix oxidase, domain 3 111 223 - -
Dod01g3229 768 PANTHER PROTOPORPHYRINOGEN OXIDASE 43 515 - -
Dod01g3229 768 Gene3D - 667 737 - -
Dod01g3229 768 Gene3D Protoporphyrinogen oxidase, mitochondrial; domain 2 56 466 - -
Dod01g3229 768 TIGRFAM proto_IX_ox: protoporphyrinogen oxidase 41 518 IPR004572 GO:0004729|GO:0006779
Dod01g3229 768 Pfam Flavin containing amine oxidoreductase 43 508 IPR002937 GO:0016491
Dod01g3229 768 Gene3D - 41 510 IPR036188 -
Dod01g3229 768 PANTHER PROTOPORPHYRINOGEN OXIDASE 43 515 - -
Dod01g3229 768 SUPERFAMILY FAD-linked reductases, C-terminal domain 347 463 - -
Dod01g3229 768 Pfam AUX/IAA family 664 715 IPR033389 -
Dod01g3229 768 SUPERFAMILY FAD/NAD(P)-binding domain 43 512 IPR036188 -
Dod01g3229 768 Gene3D Exocyst complex component Exo70 514 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3229 Dod-Chr1 73212071 73227128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3229 525 595 EXO70 exocyst subunit family AT3G09520 33.333 2.82e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Dod01g3229 Amino_oxidase 3.4e-56 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3229 K00231 - rcu:8265866 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3229 01 73212071 73227128 Dod06g1933 06 28534351 28536025 PCT