LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g3219	ATGGAGGATGTTCCTTCTCTCATCTCACAAATCAACGAGTCTCGCGATTTACACTACGGAGCTTCCAAGTCCTTCAACGATGTCGTAACCTTGCAGGAATCGAGATACCCTGAAATAGAACCCTCAACTCAACATCATCATCATCGTCATCATCAACAACAACAACAGCCATCATTGCCTCATACGAAGAAGAAACTTAGTCGATGCAAAACTGCCCCTGCCATGATTGCCATGGGAGACCTCAAACCAAAGACACCCCAAGTTCCAAAACCTCAATCTAGCTCCATCATAAGACAAGGGATTTGCTTGCTTGTCGTATACCTCTCTGTTGGGGTGGCTATATACTCCTTCAACAGGGAACGTTTCTCTGGCATTGAGACTCACCCTGTAATCGATGCACTCTACTTCTGCATAGTCACCATGTGTACCATAGGGTACGGCGACATAGCTCCTTTGACCCCAGTTACAAAGGTCTTCGCTTGTGTTTTTGTGTTGGTGGGGTTTGGTTTCATAGACATACTCCTCAGTGGACTTGTCAACTATGTTCTAGATTTGCAAGAGAGCATGATTTTAACCGGTCTCCAAATGGGGCCTCCAAGAACTCAGGAAGGTTTCTCTGCTAGGAATTACATAGTTGATGTGGCAAAGGGGAGGATGAGGATCCGGTTGAAGGTTGGTTTGGCACTTGGTGTTGTGGTGCTGTGTGTTGGGATTGGAAGTTTGGTGTTGTACTTTGTAGAGGACTTGGACTGGATTGATTCCATTTACTTGTCTGTTATGTCTGTCACAACTGTTGGGTACGGGGATAGGGCCTTCAAGACGCTCCCGGGTAGGTTGTTTGCGGCTATTTGGCTCTTGTTTTCCACCTTGATGGTTGCACGGGCCTTCTTGTATTTGGCCGAGGCCAGAATTGATAGAAGGCATAGGAGAATGGCCAAGAAGGTGTTGCATAGAGAAATCACCGTTGAGGATTTGCTTGCTGCTGATATCAACAACAGTGGTTTCATCAGCAAGTCAGAGTACGTAATTTTCAAGCTGAAAGAGATGGGTAAAATACAGGAAAAAGATGTGTTGCAAATTTGTGACCAATTCATGAAGCTTGATCCTTCTAATTGTGGGAAGATAACGCTACCTCATCTCTTGGAAGGCAACTGA	1155	0.4537	MEDVPSLISQINESRDLHYGASKSFNDVVTLQESRYPEIEPSTQHHHHRHHQQQQQPSLPHTKKKLSRCKTAPAMIAMGDLKPKTPQVPKPQSSSIIRQGICLLVVYLSVGVAIYSFNRERFSGIETHPVIDALYFCIVTMCTIGYGDIAPLTPVTKVFACVFVLVGFGFIDILLSGLVNYVLDLQESMILTGLQMGPPRTQEGFSARNYIVDVAKGRMRIRLKVGLALGVVVLCVGIGSLVLYFVEDLDWIDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLHREITVEDLLAADINNSGFISKSEYVIFKLKEMGKIQEKDVLQICDQFMKLDPSNCGKITLPHLLEGN*	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g3219	384	ProSitePatterns	EF-hand calcium-binding domain.	329	341	IPR018247	-
	Dod01g3219	384	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	49	380	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Dod01g3219	384	Gene3D	-	208	328	-	-
	Dod01g3219	384	Gene3D	-	80	191	-	-
	Dod01g3219	384	SUPERFAMILY	Voltage-gated potassium channels	93	182	-	-
	Dod01g3219	384	PRINTS	Two pore domain K+ channel signature	263	272	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Dod01g3219	384	PRINTS	Two pore domain K+ channel signature	139	167	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Dod01g3219	384	PANTHER	TWO-PORE POTASSIUM CHANNEL 4-RELATED	49	380	-	-
	Dod01g3219	384	MobiDBLite	consensus disorder prediction	40	64	-	-
	Dod01g3219	384	Pfam	Ion channel	232	301	IPR013099	-
	Dod01g3219	384	Pfam	Ion channel	103	182	IPR013099	-
	Dod01g3219	384	SUPERFAMILY	EF-hand	326	380	IPR011992	-
	Dod01g3219	384	SUPERFAMILY	Voltage-gated potassium channels	216	323	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g3219	Dod-Chr1	73108244	73110185	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g3219	64	381	Ion Channels	AT4G01840	70.279	1.16e-161	458

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g3219	K05389		-	gmx:100801488	580.096