Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3212 ATGGAAGCTAGATTTGGAACTGAAGCTCTGCAATTTTATGGTGTGGGTGGGTCCTCTGCGGGGAAGAGGAACATGGAGTGGGATTTGAACGATTGGAAATGGGACGGTGATCTTTTCATAGCTAGGCCTTTGAATCCTGTACCTGAGCACAGGCAATTCTTCCCTGATGGTGCTGGGATCCCTGTGGCTGGTGGTTCCTCCAACTCCAACAGCTCATCTTCCTGCTCTGATGAGGTAGATATCGGGATTCGCGGAGGGAACAAGGAAGGGGACAAGAAGAGGAGGGTTATTGTGCTGGAGGATGATGCTTTGAATGAGGAAACCGGTACACTTAGCTTGAAGCTTGGTGGTGGTAGTGGTGATGGTGGTGGGCATGGTGGCCCAATTGCAAGCTGGGAAGGAGCGAGTGGGAAGAAGAGCAGGGTAGGTGGTGGCAACTCAAATAGGGCTGTTTGTCAGGTGGAGGATTGCGGTGCGGATCTCAGTAACGCCAAAGATTATCACAGGCGTCATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAAGGCGCTTGTGGGAAACGCAATGCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCACATGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGATTGGCAGGCCATAATAAAAGGAGGAGGAAAACTAATCAAGATGCTGTTCCTAATGGAAATTCACTAAATGATGATCAAACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAGTATGCATTCTGACAGGTCAGATCAGACCAGAGATCAGGATTTGCTGACTCATCTCTTAAGGAGTCTTGCTAGTCAGGGTGGTGATCAAGGGGGTAAGAACTTGTCAAACCTTTTGCAGGAGCCAGAGAATTTGTTGAAAGAAGGGAGTTCATCTGGGAAGTCTGAGATGGTTTCTACTTTATTCTCAAATGGTTCTCAGGGCTCGCCAACTGTTACAAGGCAGCATCAAACAGTTTCTGCAGCTGAAATTCAACATCAAGTGATGCATTCACATGATGCTAGGGCTGCTGATCAACAGACCATGTCTTCTACAAAGCCTAGTGCTTCAAATAGTCCTCCAACTTACTCAGAAGCTCGAGACAGTACTACTGGCCAGACTAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCATAGAAGATATAGAAAAGTTGCCTGTGTCTGCAAATCTGGGTACTAGTTCTGTTGATTACCCATGGATACAACATGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCTCAGTCCCCTTCTAGCTCTAGTGGAGAAGCTCAGGTATGTTAG 1371 0.4573 MEARFGTEALQFYGVGGSSAGKRNMEWDLNDWKWDGDLFIARPLNPVPEHRQFFPDGAGIPVAGGSSNSNSSSSCSDEVDIGIRGGNKEGDKKRRVIVLEDDALNEETGTLSLKLGGGSGDGGGHGGPIASWEGASGKKSRVGGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGNSLNDDQTSSYLLISLLKILSSMHSDRSDQTRDQDLLTHLLRSLASQGGDQGGKNLSNLLQEPENLLKEGSSSGKSEMVSTLFSNGSQGSPTVTRQHQTVSAAEIQHQVMHSHDARAADQQTMSSTKPSASNSPPTYSEARDSTTGQTKMNNFDLNDIYIDSDDGIEDIEKLPVSANLGTSSVDYPWIQHDSHQSSPPQTSGNSDSASAQSPSSSSGEAQVC* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3212 456 MobiDBLite consensus disorder prediction 56 87 - -
Dod01g3212 456 Gene3D - 143 213 IPR036893 GO:0003677|GO:0005634
Dod01g3212 456 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 15 454 - -
Dod01g3212 456 MobiDBLite consensus disorder prediction 302 340 - -
Dod01g3212 456 MobiDBLite consensus disorder prediction 110 145 - -
Dod01g3212 456 ProSiteProfiles Zinc finger SBP-type profile. 149 226 IPR004333 GO:0003677
Dod01g3212 456 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 454 IPR044817 GO:0003677
Dod01g3212 456 MobiDBLite consensus disorder prediction 349 384 - -
Dod01g3212 456 MobiDBLite consensus disorder prediction 216 238 - -
Dod01g3212 456 MobiDBLite consensus disorder prediction 413 456 - -
Dod01g3212 456 Pfam SBP domain 152 225 IPR004333 GO:0003677
Dod01g3212 456 MobiDBLite consensus disorder prediction 302 384 - -
Dod01g3212 456 MobiDBLite consensus disorder prediction 63 78 - -
Dod01g3212 456 SUPERFAMILY SBT domain 150 230 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3212 Dod-Chr1 73043445 73046768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3212 1 435 SBP-box Gene Family AT3G60030 47.748 2.78e-104 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod01g3212 SBP 2.8e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3212 01 73043445 73046768 Dod01g3212 01 73043445 73046768 ECH