Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3202 ATGGCATCAGCGGGTGTAGCACCTGCTTCTGGAGTAACAGATATGAATGCTAGTTCAGTTGCTGTTGAAAGGTTACCTGATGAGATGAATGACATGAAGATCAGAGATGACAAGGAAATGGAACCCGCCATGGTAGATGGGAATGGGCCTGAAACAGGACATATAATTGTGACTACCATTGGTGGTAAAAATGGCCAGCCCAAGCAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGACATGGGTCTTTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACGGGTGAAACTGTAGCTATAAAGAAGGTTCTTCAAGACAAGAGATACAAGAACAGGGAATTGCAAACCATGCGCCTTCTGGACCACCCTAATGTCGTGTCTTTGAAGCATTGTTTCTTCTCTACAACTGAAAAAGATGAACTTTATCTTAACTTGGTACTTGAGTATGTTCCCGAGACTGTTAATCGGGTGATCAGACACTACAATAAAGTGAGTCAAAGGATGCCATTGATATATGTGAAACTTTATGCTTATCAGATATGCAGAGCACTTGCTTATCTTCACAACAGCATTGGAGTGTGCCACAGGGACATAAAGCCTCAAAATTTACTGGTCAATCCTCACACCCACCAACTGAAGATATGTGATTTTGGAAGTGCTAAAGTCTTGGTAAAAGGAGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGGGCAACTGAATACACCACAGCCATTGACATCTGGTCAGCTGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGACCAGCTTGTGGAAATTATCAAGGTGTTAGGTACACCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACAGAGTTTAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGATCTTTCACAAGCGAATGCCACCTGAAGCTGTGGATCTTGTCGCGAGACTACTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTTGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTGCCTAATGGGCGCTTCCTTCCTCCACTGTTTAACTTCAAAGCCAATGAACTCAAGGGAGTGCCCGTGGAGACGCTGGTGAAGCTGATTCCACCTCATGCAAGAAAGCAGTGTGCCTTATTTGGATAA 1227 0.436 MASAGVAPASGVTDMNASSVAVERLPDEMNDMKIRDDKEMEPAMVDGNGPETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIRHYNKVSQRMPLIYVKLYAYQICRALAYLHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVARLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPVETLVKLIPPHARKQCALFG* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3202 408 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3202 408 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Dod01g3202 408 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 407 - -
Dod01g3202 408 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 407 - -
Dod01g3202 408 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Dod01g3202 408 SUPERFAMILY Protein kinase-like (PK-like) 72 382 IPR011009 -
Dod01g3202 408 CDD STKc_GSK3 68 360 IPR039192 -
Dod01g3202 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Dod01g3202 408 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Dod01g3202 408 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3202 408 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3202 Dod-Chr1 72921322 72925118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3202 79 360 Core Cell Cycle Gene Families AT1G76540 34.828 7.25e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Dod01g3202 Pkinase 2.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3202 K00924 - gmx:100788046 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3202 01 72921322 72925118 Dod01g3202 01 72921322 72925118 ECH
Dod01g3202 01 72921322 72925118 Dod06g1875 06 27083275 27086433 ECH