Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3193 ATGGATGATGCCATTAAGGCAAAGAAAGGAAGGTGTATAGAGAAGAGTGATCAAGAGGGTATCAGAAAAGGTCCATGGAGCATTGAAGAAGACGCCATTCTCAACAATTACGTCGCCACACACGGTGATCGTCTCTGGAATTCCCTCGCCCGCTCCTCAGGCCTGAAGAGATCTGGGAAAAGTTGCAGGCTAAGATGGCTAAACTACTTGCGCCCTAATGTTCGGCGTGGAAATATCACACTCCAAGAACAGATAAGGATTCTTGATCTTCATTCACGGTGGGGCAATAGGTGGTCGAAAATTGCTCAGCAGTTGCCGGGAAGAACAGACAACGAGATAAAGAATTATTGGAGGACGAGAGTGAGCAAGCAAGCAAAGCAGCTCAATTGTGATGTCAATAGCAAAAAGTTCAAAGATGCCGTGCGTTATGTGTGGATGCCCCTTTTGCTGGAGCGGGTTCAGCCACCCTCGACAATCGACCCAAGCCCAAGCCCAACTGAAAGTGCAAGTGCTAATGCTGCACCTCACCAACACGGGTTGCACTTGCACAGTTCAGGTTCTGGAACAGTCTGCCTAAACAGCACTACTAACTCCTCCTCCTCCTCCTCATCATCATCCGTGGATCAGTTGCAACAACAAGTTCATTCGGATTCGGGCCATAGCGTGTCTTCTGATCAAACGGGTCAAAATGACCCGGATCTATGCCCAATTTTCAATGGTCAAATGTTTGAATATACAGCTACCACTTATACTACTACTAACCCACCCTTAGGTGTTGCTTGTGGGGACTTGCTGCTTGAGAGTTTGTGGAGCGATGAGAATATTTGGGTTCTTCCACCACTTTGTGACGACCTCGCAATCGAGGACAATTATTTCCTTCCGTGA 885 0.4757 MDDAIKAKKGRCIEKSDQEGIRKGPWSIEEDAILNNYVATHGDRLWNSLARSSGLKRSGKSCRLRWLNYLRPNVRRGNITLQEQIRILDLHSRWGNRWSKIAQQLPGRTDNEIKNYWRTRVSKQAKQLNCDVNSKKFKDAVRYVWMPLLLERVQPPSTIDPSPSPTESASANAAPHQHGLHLHSSGSGTVCLNSTTNSSSSSSSSSVDQLQQQVHSDSGHSVSSDQTGQNDPDLCPIFNGQMFEYTATTYTTTNPPLGVACGDLLLESLWSDENIWVLPPLCDDLAIEDNYFLP* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3193 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Dod01g3193 294 MobiDBLite consensus disorder prediction 182 233 - -
Dod01g3193 294 MobiDBLite consensus disorder prediction 154 233 - -
Dod01g3193 294 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 277 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod01g3193 294 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Dod01g3193 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Dod01g3193 294 SMART sant 22 72 IPR001005 -
Dod01g3193 294 SMART sant 75 123 IPR001005 -
Dod01g3193 294 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Dod01g3193 294 CDD SANT 80 119 IPR001005 -
Dod01g3193 294 Gene3D - 23 75 - -
Dod01g3193 294 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Dod01g3193 294 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Dod01g3193 294 Gene3D - 79 143 - -
Dod01g3193 294 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Dod01g3193 294 CDD SANT 25 70 IPR001005 -
Dod01g3193 294 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 14 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3193 Dod-Chr1 72793389 72795450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3193 21 228 MYB Transcription Factor Family AT2G47190 54.464 2.31e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g3193 Myb_DNA-binding 7.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3193 K09422 - gmx:100797220 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3193 01 72793389 72795450 Dod01g3193 01 72793389 72795450 ECH
Dod01g3193 01 72793389 72795450 Dod06g1971 06 29781375 29783134 PCT