Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3174 ATGGTCAATTTCGGCGGAGAACCTCACACTCACGGTCATCCCCCGCAACCCCATGATAACAACCACTTCAACCACCCTAACGGCCACAACGGAAATGCCTTCCCCAACCATGATTACCAACAACATCCTAACAACCACTATATCAACCCTCTCGATTCTGGATATCCTCCTAATCCTAATCATAATCATAATAATAATACCCATTCCATGCCTCGTCCACCTCGCAAACGAGCTTGGTCTTCAACTCCTCCTGATCAAGTGGATGGTGTGAAAGTCTATGTTGCGCCGGTTCCCAGAACATCAACAGAGGCTGATATCCGCCTTGTGTTCGAAGGACATGGGACTATTGTTGAGGTTGTTCTTTTAAAGGATAAGAGAACTGGTGCACGACAAGGAAGTTGTTTTGTAAAATACGCAACATTAGATGAAGCTGACAGGGCCATTAAGGCTTTAAACAATCAGTATACATTTCCTGGAGAATTATCTGCTGTTGTAGTCAGATTTGCTGATCGGGAACTTGAACGCCTTGGGTTTGGCCGAAACTTGGAGAAGAAAGATCCTTCAGAAGGCAAACTTCTTGTCTCCTCCACTCCAAAGGTGGCAGATAAAGTGTTTGTTAGTTTCATCAACAGAGAAGCTTCTGAAAAGGAAATTGAAGAAATATTTTCCACTTATGGGCATGTAGAAGATGTTTTCATTGCGCACAGTCGTGGATATGCTTTTGTTAAATTTTCTAATAGAGAAATGGCGCTGGCAGCAATCAAAGGGCTGAACATGTCGTTCACTATGAGAGGCTGTGACCATCCATTAATTGTTCGTTTTGCGGATCCAAAGAAACCTAAGACTGGAGAATCAAGGGGCAACTGTTTTTCTGGGAATGCAAATTTCGGTCCCTGTTCTCAAGAACCTGCAGTTTGGCCAGTGCCAAGTTTTGGTGATCCCAATATTCGAGGGAGTATGCTGCCAATTGCCCCACATCATTCCACAATTCCACACCCACAAGTTGCTTCTAATAGGCCAAATTGGCAACCTGGTGCTAATGTGGTACAACAGCCATTTCCTCCCCAGCAACCACATTCACAATTGGCTTCAATGCCTTTCCAATCCCTTCAAGCTCCAAAGTTGTCTTCTCAACCACTTGTTCCTGAGGTGCAGAGACAATCACATCCAGCTGATTCTCCAGTTCAAAATATAGAGCAGCAGCTAAGTTCACAGTTGCCTACTCAGAGTGGAAGCAATCCTAATACGGTTGCTGGCACGGCCTCACCTGATATGCCGACAAGTCCCCAAGATGAAGAATTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGACGGTCATACTTATTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAAAAGCCTGAGGAGTATACTCTTTATGAGAAAGAACCACAGAAGCAGGAACAGGAGGATAGTAGCTGTCTTATCTCACAACTTTCATTATCCTCCGCCCAACAAGTTGCTCAAAGTCAACAGGAAACAAATCATGATCACGGGCAGTCAGAAACAAGTCCTATTGTTGCACAGGTAATTTAA 1566 0.4451 MVNFGGEPHTHGHPPQPHDNNHFNHPNGHNGNAFPNHDYQQHPNNHYINPLDSGYPPNPNHNHNNNTHSMPRPPRKRAWSSTPPDQVDGVKVYVAPVPRTSTEADIRLVFEGHGTIVEVVLLKDKRTGARQGSCFVKYATLDEADRAIKALNNQYTFPGELSAVVVRFADRELERLGFGRNLEKKDPSEGKLLVSSTPKVADKVFVSFINREASEKEIEEIFSTYGHVEDVFIAHSRGYAFVKFSNREMALAAIKGLNMSFTMRGCDHPLIVRFADPKKPKTGESRGNCFSGNANFGPCSQEPAVWPVPSFGDPNIRGSMLPIAPHHSTIPHPQVASNRPNWQPGANVVQQPFPPQQPHSQLASMPFQSLQAPKLSSQPLVPEVQRQSHPADSPVQNIEQQLSSQLPTQSGSNPNTVAGTASPDMPTSPQDEEFPECDWSEHYCPDGHTYYYNCVTCESRWEKPEEYTLYEKEPQKQEQEDSSCLISQLSLSSAQQVAQSQQETNHDHGQSETSPIVAQVI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3174 521 SUPERFAMILY RNA-binding domain, RBD 61 177 IPR035979 GO:0003676
Dod01g3174 521 SMART rrm1_1 91 167 IPR000504 GO:0003723
Dod01g3174 521 SMART rrm1_1 203 273 IPR000504 GO:0003723
Dod01g3174 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 171 IPR000504 GO:0003723
Dod01g3174 521 MobiDBLite consensus disorder prediction 331 427 - -
Dod01g3174 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 277 IPR000504 GO:0003723
Dod01g3174 521 MobiDBLite consensus disorder prediction 20 48 - -
Dod01g3174 521 SUPERFAMILY RNA-binding domain, RBD 193 286 IPR035979 GO:0003676
Dod01g3174 521 CDD WW 437 466 IPR001202 GO:0005515
Dod01g3174 521 MobiDBLite consensus disorder prediction 55 71 - -
Dod01g3174 521 SMART ww_5 434 466 IPR001202 GO:0005515
Dod01g3174 521 Pfam WW domain 437 464 IPR001202 GO:0005515
Dod01g3174 521 PANTHER RNA BINDING PROTEIN 76 406 - -
Dod01g3174 521 Gene3D - 435 484 - -
Dod01g3174 521 MobiDBLite consensus disorder prediction 326 435 - -
Dod01g3174 521 ProSitePatterns WW/rsp5/WWP domain signature. 439 464 IPR001202 GO:0005515
Dod01g3174 521 SUPERFAMILY WW domain 438 470 IPR036020 GO:0005515
Dod01g3174 521 MobiDBLite consensus disorder prediction 1 85 - -
Dod01g3174 521 Gene3D - 193 287 IPR012677 -
Dod01g3174 521 Gene3D - 78 175 IPR012677 -
Dod01g3174 521 ProSiteProfiles WW/rsp5/WWP domain profile. 439 466 IPR001202 GO:0005515
Dod01g3174 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 259 IPR000504 GO:0003723
Dod01g3174 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 159 IPR000504 GO:0003723
Dod01g3174 521 MobiDBLite consensus disorder prediction 495 521 - -
Dod01g3174 521 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 76 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3174 Dod-Chr1 72608511 72619949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3174 68 281 Eukaryotic Initiation Factors Gene Family AT1G71770 27.477 1.99e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3174 K13207 - gmx:100776162 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3174 01 72608511 72619949 Dod01g3174 01 72608511 72619949 ECH