Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3173 ATGGAGAAGAAGAAGGAGATGATGATGGGTGTGAAGATGGAGGATGCGGTTGGATCTTCTTCATCAGGTTATAATAATCCATTCTCAAGCGTGTTTGATTTCGTTGAAGAAGCGGATGGAAAGGGCTCTTTAGGGTTTATGGAGTTACTGGGTTCGCAGGACTACTATAGTACTGCTCTTCTGCTTGATTCGCCTCAAGTGTGTGTGGCTCATGATGATAACTCTCTCAAGGATCATCCACCCAAGGCTGCAGGGAAAGAGTGTTCGGAGGTCTCAAACCAGCAGCAACCTCCCACTCCAAACTCTTCTTCCATTTCATCTGCCTCCAGTGAGGCTGTCCATGATGAACATAATAAAACTACTGTAGACCAAGCACGTGATGATGAGCACCAAAAGAACAACAAACAGTTGAAGGCCAAGAAGACAAATCAGAAGAGACAGAAACAAGCGAGATTCGCGTTCATGACGAAAAGCGAGGTTGATCACCTGGAAGATGGGTACAGATGGAGAAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAGTGTGAAGAAACGTGTGGAGCGGTCTTTCAATGATCCAAGCGTTGTGGTGACAACCTACGAAGGGCAACACACACATCCAAGCCCAGTTATGGGTCGCTCATCAGGCCTTGCTGGACCTCCAATACCACCTGGTGTCTCTGCCACCGCCATCGGCTTTGGTTCGTTAATGCCCGAAAACTACTTATCGCAATACTATCAGCGACAACACAATCAACAACAACACCTATTCAGTACATTGTCATCTTTGGGTTTCCCTTCTTCAAAGAGTAGTAATGCTTTCATTTCTCAAGAGAGACAGCTTTGTAATCCAGCAGGGACGAATGCATTTCTAAGGGACCACGGGCTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG 972 0.4599 MEKKKEMMMGVKMEDAVGSSSSGYNNPFSSVFDFVEEADGKGSLGFMELLGSQDYYSTALLLDSPQVCVAHDDNSLKDHPPKAAGKECSEVSNQQQPPTPNSSSISSASSEAVHDEHNKTTVDQARDDEHQKNNKQLKAKKTNQKRQKQARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCSVKKRVERSFNDPSVVVTTYEGQHTHPSPVMGRSSGLAGPPIPPGVSATAIGFGSLMPENYLSQYYQRQHNQQQHLFSTLSSLGFPSSKSSNAFISQERQLCNPAGTNAFLRDHGLLQDVVPSHMLKEE* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3173 323 Gene3D WRKY domain 147 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod01g3173 323 MobiDBLite consensus disorder prediction 72 153 - -
Dod01g3173 323 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod01g3173 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 315 IPR044810 GO:0003700
Dod01g3173 323 MobiDBLite consensus disorder prediction 88 111 - -
Dod01g3173 323 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod01g3173 323 PANTHER WRKY TRANSCRIPTION FACTOR 1 315 - -
Dod01g3173 323 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod01g3173 323 MobiDBLite consensus disorder prediction 112 136 - -
Dod01g3173 323 PIRSF WRKY_txn_fact_IIc 1 323 IPR017396 GO:0003700
Dod01g3173 323 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod01g3173 323 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3173 Dod-Chr1 72605564 72607582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3173 13 323 WRKY Transcription Factor Family AT2G47260 46.512 7.46e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dod01g3173 WRKY 8.9e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3173 - - gmx:100784158 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3173 01 72605564 72607582 Dod01g3173 01 72605564 72607582 ECH
Dod01g3173 01 72605564 72607582 Dod06g1978 06 30473496 30475366 PCT