Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3167 GACGACGGAGAAATCGATCCACTCGATGCCTTCATGGAAGGGATTCACGAGGAGATGAAGGCGGCGCCGCCTCCGAAGGTGAAGGAGAAGGCGGAGGACAGGTACAAGGACGACTTGGAGGAAGATCCCATGGAGAGCTTCTTGAGGGCGAAGAAGGACCTCGGGTTGACGCTTGCGTCCGAGGCACTTCACGCTGGGTATGATTCTGATGAAGAGGTTTACGCCGCCGCGAAGGCCGTAGACGCTGGTTTGGTAGAGTATGATTCCGATGATAACCCTATTGTTCTTGACAAGAAGAAGATCGAGCCAATACCTGCTCTTGATCACAGTTCTATCGACTACGAGCCCTTCAATAAGGATTTTTATGAGGAGTCACCTTCAATTGCAGGTATGAGTGAGCAAGATGTAACTGAATACAGGAAGAGTTTGGCTATTCGTGTTTCGGGATTTGATGTGCCGAAGCCAATTAAGACATTTGAGGACTGTGGATTCTCTTCTCAAATTATGAGTGCTATAAAGAAGCAAGGTTATGAGAAGCCCACATCTATACAATGCCAAGCTTTACCCGTTGTGCTTTCTGGTAGGGATATCATTGGTATAGCAAAAACTGGTTCCGGTAAGACCGCTGCTTTTGTGCTTCCTATGATCGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAGGGTCCTATAGGAGTTATATGTGCACCTACTAGAGAATTGGCACATCAGATATATCTGGAGGCTAAGAAGTTTGCAAAATCATATGGGATACGTGTCTCTGCTGTCTATGGTGGGATGTCGAAACTTGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGACGAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCAATTGTTGGTCAGATTAGGCCAGACCGGCAGACGTTACTTTTTTCTGCAACAATGCCTCGTAAAGTTGAGAAGTTGGCCAGAGAAATCCTTAGTGATCCCATTAGAGTAACTGTTGGAGAGGTGGGAATGGCAAATGAAGACATTACTCAAGTTGTTCAAGTAATTCCTTCCGATAATGAAAAATTGCCTTGGCTTCTGGAGAAGCTGCCTGAAATGATTGATCAGGGTGATGTCCTAGTATTTGCTTCCAAGAAGGCTACTGTGGACGAAATTGAATCGCAATTGGCTCAGATGGGCTTTAAAGTCGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTGCAGAAGTTTAAATCTGGCATCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGATATCAAGTCACTTAAGTCAGTGGTAAACTTTGATATTGCAAAGGATATGGACATGCATGTCCATCGCATTGGAAGAACTGGACGTGCCGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCAGGTGAACTGGTTAATAGCTTGATTGCTGCTGGCCAGAATGTGTCCGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGTGGCAGCGGTAGCAGTGGCGGTGGCAGCCGGGGTGTGCGTGGGGTGGATTTTGGTCTGGGTATTGGATATAACCCTGAGTCAAACACTGCTCCGTCTAACACCCATCCAAACCGTTCTGCTGCAGTAAATTCTCTGCGAACAGGAATGATGTCACAATTTAAGAGCAACTTTGTTGCTGCTTCATCGAACTCTCAAAGTCAAGGATTCAGTAGCAATACAAGCATGGCTGGTTACAAGAGACCAGCACTCCCTGGCTTTGTATCTGGTGGATCAATTGGCGGGGATGTAAATGCTCATCGGAATACTGCTTCATCC 1977 0.4618 DDGEIDPLDAFMEGIHEEMKAAPPPKVKEKAEDRYKDDLEEDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPIVLDKKKIEPIPALDHSSIDYEPFNKDFYEESPSIAGMSEQDVTEYRKSLAIRVSGFDVPKPIKTFEDCGFSSQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKSYGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDNEKLPWLLEKLPEMIDQGDVLVFASKKATVDEIESQLAQMGFKVAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSLKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSVELMDLAMKDGRFRSKRDARKGGGGSGSSGGGSRGVRGVDFGLGIGYNPESNTAPSNTHPNRSAAVNSLRTGMMSQFKSNFVAASSNSQSQGFSSNTSMAGYKRPALPGFVSGGSIGGDVNAHRNTASS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3167 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 531 IPR027417 -
Dod01g3167 659 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Dod01g3167 659 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 363 IPR014001 -
Dod01g3167 659 CDD DEADc_DDX42 168 364 - -
Dod01g3167 659 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 584 - -
Dod01g3167 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 366 IPR027417 -
Dod01g3167 659 MobiDBLite consensus disorder prediction 13 40 - -
Dod01g3167 659 Gene3D - 365 541 IPR027417 -
Dod01g3167 659 MobiDBLite consensus disorder prediction 544 594 - -
Dod01g3167 659 Gene3D - 120 364 IPR027417 -
Dod01g3167 659 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 10 584 - -
Dod01g3167 659 MobiDBLite consensus disorder prediction 579 594 - -
Dod01g3167 659 Pfam Helicase conserved C-terminal domain 392 497 IPR001650 -
Dod01g3167 659 SMART ultradead3 176 378 IPR014001 -
Dod01g3167 659 Pfam DEAD/DEAH box helicase 181 352 IPR011545 GO:0003676|GO:0005524
Dod01g3167 659 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 537 IPR001650 -
Dod01g3167 659 SMART helicmild6 416 497 IPR001650 -
Dod01g3167 659 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 309 317 IPR000629 -
Dod01g3167 659 CDD SF2_C_DEAD 375 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3167 Dod-Chr1 72500571 72504377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3167 154 507 Eukaryotic Initiation Factors Gene Family AT3G19760 32.213 5.45e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3167 K12835 - gmx:100814854 1159.82