Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3150 ATGCAACCTATGAATTCGTCATCAACCAATTTAGCAAGACTCATGAGTTCAACTCTCAGAGCTACTGACATATCATTCTCTGATATTGAGACGAAGGTGGCTCCATTATTATTTCAAGCATTTGAGACCGTCCCTCACTTAGCCCAAATCTCATACATAGGGATAGAAGGTTTATTTTTCTCATTCTACACTGAAGATGACCATGTTATGGCAATGTACTCAAACTCATCATCAACTTCTAATTGGGGTGGCTCAAGTGCAATACAATACTATATCCAGCATGTAAGTCGTGACAATGGAGAATTATATGGGGATGCCACAATATGTAGTGAGCTCTCTATGAATGCAAGTTGGGTTGGGGAAGCATTCAATAGTTCAAATGGGTATGCCTCATTGGGAACCAAGTGGAACAATGGTCACGATCTTCTGTTCATTAGTTCAGCTAGAATCACAACAAAAAGAGGAGTGATCTCTCTAGGGTTTAATACAACACCAATGGCTGATTTTTTCACTAATATTGGTCAACATGGTGCAAGATTGTATTTGGTTACCAAAGATGGACAAGTGCTTGTAGAAGGGGTCCAACATACCCGTATGCAGATTTCTAATGATATGGTTTCCTTCCAATGTATGAATAGTGCGAATAGTGATCAAACTATTTATGAGGGTGCTGTCTCGTGCAAAGATGGAGTGGTTGCTTCTAATTTGAATATTCAGGGTGTTGATTATTTAATGCACTGCTCCTCCATTGATATGATGGGAATAGAATCGGTGTATGTTGTGGCTGTCCCACAGAATAAAGGGGTAAAATTTGTTATCAACTGTAATAAGAAAAATAGATTGATCCTACTGATTGTGACAATGGTCATGATATTCACTGCCACAGTCAGCTCTCTATTTACAAGTGTAGAAAGTGCTAGAGCCATTAGGCGAGAAAAGGAAGCCACTGAACAAGCTGAGCAAAAGAGTACGTACAAAAGCCTTGCTTTCGACGCTGCCAGCCATGACATTCGTAATTTGCTCACAGGCCTTGCTGGTTTGATAGAGATGTCCTATCAGCAAGTTGTCCCTGGTTCAAAACTAGAGACCAACTTGAAACAAATGGACTCTGGTACCAAAGATTTACTAGGAATCCTGGATTCTATACTTGATACAAGCAAAATTGAGGCAGGCAAGATGGAGCTTGAGGAAGACGAATTTGATGTGTTCCAACTCTTGGAAGATGTAGTTGATTGGTACCGTCCCAACGCTTTGAAGAAAGGAGTAGATATTGTGTTAGACCCTTGCAATGGCTCTGTACTCAAGTATTCACGCACCAAGGGCGACAGAATAAAACTCAAACGAGTCTTGTGCAACTTGGTGAACAATGCCGTAAAATTTACTGATGAAGGCCACATAGCAATTCGTGCATGGGCACAGGTGTCGACATTGGATAACTCAGTCGTCGCTACTAACCAATCATGCAACTTCAAGAGACATTGGTCATGCTTGTTTTCTAGAAAAAATGAAGCACTTGGTGATATTGAAGCCGTGAATTCAACCCAACAAGATCCAGTTCCCGTGAGCTTTATATTTGAAGTGGACGATACAGGCAAAGGAATTCCTAAGGACAAGTACGAGTCTGTGTTTGAGAATTATGTGCAAGTCAAAGAAAATGCTCATGGCCATGGTGGAACTGGCTTGGGACTTGGCATTGTGAAGTCATTGGTACGATTGATGCATGGAGATATTGGAATTGTGGACAAGAATATTGGTGAAAAAGGAACCTGTTTCAGGTTCAGTGTGCTCCTTACTGTGTGGGAAACAATGACAGATGACATCACAAGAGAAGGTGACAGAAACCAATATCAGGGACTAACCATTCTTCCTGAGTGTGGTGAGTGTAGTTCTAGTAGAGAACAGGGAGAAAGTGGACCAAGAGAATCCTTTGGACATGATAGGTCTAAGCCAAGGACATCTTCAGTTGATGAAAGAGGAATAAAATTAGAATGTGGTGAGTCAAGCAATGATGACAAGCCCTTGAGTGGTAAGAAAATTTTGGTGGTTGAGGACGTTGAAATGTTACGCAGGATAGCTGTGGCTACTTTGAAACGACTTGGTGCCTCTGTAGAGCAATGTGAGAATGGTGAGCAAGCTGTGCAGCTAGTCGAGGAGGGTCTAGCTAGAGGTTGTCTCAATCCTCCATATGATTACATCTTAATGGACTGCCAGATGCCTGTGATGAATGGATGCGAGGCAACACGGCAGATAAGGGAGATCGAGAAGCCACATGGTATTAGCATTCCTATCATTGCATTAACTGCTAATACTGGGGAAGAGGCAAAAATGACCGTAGAAGCTGGGATGGACGATTGCTTAGTCAAACCCATTAGGAATGAGCATTTACTTGAAGCCATCAGAAACATACATGGTAGAGAGCAATAG 2424 0.4179 MQPMNSSSTNLARLMSSTLRATDISFSDIETKVAPLLFQAFETVPHLAQISYIGIEGLFFSFYTEDDHVMAMYSNSSSTSNWGGSSAIQYYIQHVSRDNGELYGDATICSELSMNASWVGEAFNSSNGYASLGTKWNNGHDLLFISSARITTKRGVISLGFNTTPMADFFTNIGQHGARLYLVTKDGQVLVEGVQHTRMQISNDMVSFQCMNSANSDQTIYEGAVSCKDGVVASNLNIQGVDYLMHCSSIDMMGIESVYVVAVPQNKGVKFVINCNKKNRLILLIVTMVMIFTATVSSLFTSVESARAIRREKEATEQAEQKSTYKSLAFDAASHDIRNLLTGLAGLIEMSYQQVVPGSKLETNLKQMDSGTKDLLGILDSILDTSKIEAGKMELEEDEFDVFQLLEDVVDWYRPNALKKGVDIVLDPCNGSVLKYSRTKGDRIKLKRVLCNLVNNAVKFTDEGHIAIRAWAQVSTLDNSVVATNQSCNFKRHWSCLFSRKNEALGDIEAVNSTQQDPVPVSFIFEVDDTGKGIPKDKYESVFENYVQVKENAHGHGGTGLGLGIVKSLVRLMHGDIGIVDKNIGEKGTCFRFSVLLTVWETMTDDITREGDRNQYQGLTILPECGECSSSREQGESGPRESFGHDRSKPRTSSVDERGIKLECGESSNDDKPLSGKKILVVEDVEMLRRIAVATLKRLGASVEQCENGEQAVQLVEEGLARGCLNPPYDYILMDCQMPVMNGCEATRQIREIEKPHGISIPIIALTANTGEEAKMTVEAGMDDCLVKPIRNEHLLEAIRNIHGREQ* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3150 807 PANTHER HISTIDINE KINASE CKI1-LIKE 2 617 - -
Dod01g3150 807 PRINTS Bacterial sensor protein C-terminal signature 557 575 IPR004358 GO:0016310|GO:0016772
Dod01g3150 807 PRINTS Bacterial sensor protein C-terminal signature 523 537 IPR004358 GO:0016310|GO:0016772
Dod01g3150 807 PRINTS Bacterial sensor protein C-terminal signature 541 551 IPR004358 GO:0016310|GO:0016772
Dod01g3150 807 Gene3D - 660 806 - -
Dod01g3150 807 Pfam Response regulator receiver domain 679 800 IPR001789 GO:0000160
Dod01g3150 807 SMART REC_2 677 799 IPR001789 GO:0000160
Dod01g3150 807 MobiDBLite consensus disorder prediction 638 673 - -
Dod01g3150 807 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 380 595 IPR036890 -
Dod01g3150 807 CDD HisKA 333 387 IPR003661 GO:0000155|GO:0007165
Dod01g3150 807 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 441 597 IPR003594 -
Dod01g3150 807 SUPERFAMILY CheY-like 673 804 IPR011006 -
Dod01g3150 807 SMART HisKA_10 325 391 IPR003661 GO:0000155|GO:0007165
Dod01g3150 807 SMART HKATPase_4 441 599 IPR003594 -
Dod01g3150 807 Gene3D - 393 603 IPR036890 -
Dod01g3150 807 ProSiteProfiles Histidine kinase domain profile. 332 599 IPR005467 -
Dod01g3150 807 Gene3D - 308 392 - -
Dod01g3150 807 CDD REC_hyHK_CKI1_RcsC-like 679 799 - -
Dod01g3150 807 PANTHER HISTIDINE KINASE CKI1-LIKE 656 801 - -
Dod01g3150 807 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 312 393 IPR036097 GO:0000155|GO:0007165
Dod01g3150 807 ProSiteProfiles Response regulatory domain profile. 678 803 IPR001789 GO:0000160
Dod01g3150 807 MobiDBLite consensus disorder prediction 627 673 - -
Dod01g3150 807 PANTHER TWO-COMPONENT HISTIDINE KINASE 656 801 - -
Dod01g3150 807 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3150 Dod-Chr1 72397485 72401587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3150 669 807 Histidine Kinase Gene Family AT2G47430 44.898 2.76e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod01g3150 HATPase_c 1.4e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3150 - - aprc:113873801 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3150 01 72397485 72401587 Dod01g3150 01 72397485 72401587 ECH