Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3148 ATGGAAGAGGTTGTCTTGCTTGTCGATGACCTGAAATCGCTTTCCGGGATTCATCGCTGTAGAATATGTCATGAAGAAGAAGAGTTCGAGAGCCCATCAAGCTTGGAAGCACCCTGTGCTTGTTCTGGTACCGTTAAGTTCGCTCATAGAGATTGCATTCAGAGATGGTGCAACGAGAAAGGAAACACAATATGTGAAATATGTCTCCAGCAATATGAACCTGGATATACAGCTCATCCTAAGAAGTCTGAGATAAATGACGAGGCAATGTCCTTTAGGGTGGAGCAAGAACCGTCAAACGCAAGAATAAATGCTAGCACTATGGGTGAAGTTGAAGGAGTTGCATTAGAAGGCGATTACTCTGAATGCAGCTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTAGCATTAGCTTTTACATTTGTCTTGCTTGTAAGACATCTTTTCACAGTGATTATAAATGGAACGGAAGATTACCCATTTACACTTATAACAGTAATTATACTAAAGGCTAGCGGGATTATTATACCAATGTACATAATTATTTGGACGATCGGAGCCATTCAGAACAGTATTCAGCAACACTATCAGGATTATGACTACGGCAGATCAATGTCTAATGGAAATGAAGACCAGTCACGGCTTGATGCATATGCAAGACATATAGATTATTGA 681 0.4141 MEEVVLLVDDLKSLSGIHRCRICHEEEEFESPSSLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTAHPKKSEINDEAMSFRVEQEPSNARINASTMGEVEGVALEGDYSECSSAADRSASCCRSLALAFTFVLLVRHLFTVIINGTEDYPFTLITVIILKASGIIIPMYIIIWTIGAIQNSIQQHYQDYDYGRSMSNGNEDQSRLDAYARHIDY* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3148 226 SMART ringv_2 19 69 IPR011016 GO:0008270
Dod01g3148 226 ProSiteProfiles Zinc finger RING-CH-type profile. 12 75 IPR011016 GO:0008270
Dod01g3148 226 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 209 - -
Dod01g3148 226 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 209 IPR033275 -
Dod01g3148 226 CDD RING_CH-C4HC3_MARCH 20 68 - -
Dod01g3148 226 SUPERFAMILY RING/U-box 18 73 - -
Dod01g3148 226 Pfam RING-variant domain 20 68 IPR011016 GO:0008270
Dod01g3148 226 Pfam Protein of unknown function (DUF3675) 74 187 IPR022143 -
Dod01g3148 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 79 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3148 Dod-Chr1 72375368 72379160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3148 20 68 C3H Transcription Factor Family AT2G37950 40.816 2.95e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3148 - - gmx:100802379 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3148 01 72375368 72379160 Dod01g3148 01 72375368 72379160 ECH