Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3134 ATGTCTGATCACAATAATCGCAGCTCATTACCACCAAGACTATTTGGTTTCCCCTTAACAGGGCAGGAAGAGGTTCCAGAAAGGAAATACGATTTGGGAGAGGACAGAAAATTCCGGTGCCAATACTGCAGGCGAGTGTTTGCGACCTCGCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAAGAGCGTCAAAGGGCGAGGCGATTCCAAATCCAGAGTGACCACCACAGAAGGTCCATAGCTACTTATGCCCCGCATCCACAAGTAGCAGTACCCTCCATTTACTTACAATATGGCTCGAGTATCGGGAATAATATTATTCCTGTAGCCATGTTTGATCCTCGTCAACAACAATTGCAACGCAACAACACAAGGCACTTGCCGACACGCCCCGTTTTGATTCCTTCTTCTTCAATGCATAATCGTACTGCTCCATGGTTTCCTTTTCACTTTTATGCGTCACCTACAGTACTGCAAGCTGCTGCTAGTGTCGGTGAATTTCCTCAAAAACTTCCAGAGAGGGAAGTGGGTGATGCCCGTCTCAAATTGTCTCTGTCCATTTGA 567 0.4744 MSDHNNRSSLPPRLFGFPLTGQEEVPERKYDLGEDRKFRCQYCRRVFATSQALGGHQNAHKKERQRARRFQIQSDHHRRSIATYAPHPQVAVPSIYLQYGSSIGNNIIPVAMFDPRQQQLQRNNTRHLPTRPVLIPSSSMHNRTAPWFPFHFYASPTVLQAAASVGEFPQKLPEREVGDARLKLSLSI* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3134 188 Gene3D Classic Zinc Finger 24 87 - -
Dod01g3134 188 SUPERFAMILY beta-beta-alpha zinc fingers 35 65 IPR036236 -
Dod01g3134 188 PANTHER ZINC FINGER PROTEIN 6-LIKE 3 187 - -
Dod01g3134 188 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Dod01g3134 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Dod01g3134 188 PANTHER ZINC FINGER PROTEIN 5 3 187 IPR044299 GO:0010090
Dod01g3134 188 Pfam C2H2-type zinc finger 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3134 Dod-Chr1 72125633 72126304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3134 11 182 C2H2 Transcription Factor Family AT5G06650 31.183 1.25e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g3134 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3134 - - gmx:100806818 176.407