Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3130 ATGGATGTTCAAGTTCGTACACTAGCAGAGAAAAGCTGTAACGATTGCCACACAACCACCACCCCTCTATGGAGGGCTGGTCCAGATGGGCCAAGGTCTCTTTGCAATGCATGTGGGCTAAGATACAGAAAAAGGAGGAAAGCTATGCTAGGCTTGGATAAAGGGGAACCAAAGAAAAGCAAGAAGAGGAATAGAACAAGAAGGAGCCATGGAGTGGGAGTTCCATTGAATACGGCAGTGATTGATTTTGGTCAAAAAATGGATCAGCCGTATAATTTACATGAAAGGCAATGCAATTTAAAAGAGGAAGAAGAAGCAGCTATATTGTTGATGGCTCTTTCTTGCGATTCTCTTTGTGCTTACTAA 366 0.429 MDVQVRTLAEKSCNDCHTTTTPLWRAGPDGPRSLCNACGLRYRKRRKAMLGLDKGEPKKSKKRNRTRRSHGVGVPLNTAVIDFGQKMDQPYNLHERQCNLKEEEEAAILLMALSCDSLCAY* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3130 121 PANTHER OS01G0976800 PROTEIN 9 120 - -
Dod01g3130 121 Pfam GATA zinc finger 13 47 IPR000679 GO:0006355|GO:0043565
Dod01g3130 121 ProSiteProfiles GATA-type zinc finger domain profile. 7 43 IPR000679 GO:0006355|GO:0043565
Dod01g3130 121 ProSitePatterns GATA-type zinc finger domain. 13 38 IPR000679 GO:0006355|GO:0043565
Dod01g3130 121 Gene3D - 8 71 IPR013088 GO:0006355|GO:0008270
Dod01g3130 121 CDD ZnF_GATA 12 65 IPR000679 GO:0006355|GO:0043565
Dod01g3130 121 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 10 48 - -
Dod01g3130 121 SMART GATA_3 7 58 IPR000679 GO:0006355|GO:0043565
Dod01g3130 121 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3130 Dod-Chr1 72084221 72085613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3130 11 117 C2C2-Gata Transcription Factor Family AT3G06740 44.954 4.05e-24 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod01g3130 GATA 4.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3130 - - adu:107492427 134.035