Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3117 ATGGTGTCTCTGAAGCTCCAGAAGCGGCTTGCAGCTAGCGTCCTCAAGTGTGGCAGAGGCAAGGTCTGGCTTGACCCCAATGAAGGCAACGAAATCTCCATGGCCAATTCTCGCCAAAACATCAGGAAGCTGGTGAAGGATGGTTTCATTATCAGGAAACCCACCAAGATTCACTCTCGCTCACGTGCCCGTCGTATGAAGGAAGCCAAGAGGAAAGGACGTCACTCTGGATATGGTAAGCGCAAGGGTACTAGGGAGGCAAGGCTTCCCACTAAAGTGCTTTGGATGAGGAGAATGCGAGTCCTCAGACGCTTGCTTCGCAAATACAGGGAATCCAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGAGTGCTAATGGAGAGCATTCACAAGTCCAAGGCTGAGAAGGCTAGAGAGAAGACCTTGTCTGACCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCAGAGAAAGGAAACTTGCTCGCAGGGAGGAGCGCCTGGCCCAGGGTCCTGGAGAAAAGCCTGCCCCTGCACCCAGTGCAGCACCTGCTACAGCATCACAGCCTGCCCAAGCATCAAAGAAATCCAAAACTACTCGGGCTCTTATCTAG 654 0.5122 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKPAPAPSAAPATASQPAQASKKSKTTRALI* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3117 217 PANTHER 60S RIBOSOMAL PROTEIN L19 1 211 IPR039547 GO:0003723|GO:0003735|GO:0022625
Dod01g3117 217 MobiDBLite consensus disorder prediction 198 217 - -
Dod01g3117 217 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Dod01g3117 217 MobiDBLite consensus disorder prediction 144 217 - -
Dod01g3117 217 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Dod01g3117 217 MobiDBLite consensus disorder prediction 57 79 - -
Dod01g3117 217 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Dod01g3117 217 Gene3D - 57 188 - -
Dod01g3117 217 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dod01g3117 217 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dod01g3117 217 PANTHER RIBOSOMAL PROTEIN L19 1 211 - -
Dod01g3117 217 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dod01g3117 217 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Dod01g3117 217 Coils Coil 161 181 - -
Dod01g3117 217 MobiDBLite consensus disorder prediction 144 184 - -
Dod01g3117 217 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3117 Dod-Chr1 71918072 71920048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3117 1 211 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.360 4.02e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3117 K02885 - gmx:100527501 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3117 01 71918072 71920048 Dod01g3117 01 71918072 71920048 ECH