Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3116 ATGTGTGGCGGTGCCATCATCGCAGAGTTCATCCCTCGCAACCGCTCTCGCCGCCTTACAGCCTCCGAAATCTGGCCCAACACATTCGGTAAACACAATGACGACGACGACGACACCGACTTCGATGGTTTCTCTCATCTCCAACGCCACCAACCACCACCCCCTCTCATAACACCGTCCCCACGGACCCCACCAGTTAATGAACAAGTTGAGAAGCCCGCGAAGAGGCAGAGGAAGAACCTCTACAGAGGGATCAGGCAGCGTCCGTGGGGCAAGTGGGCCGCGGAGATTCGCGATCCAAGAAAAGGGGTTCGCGTTTGGCTCGGCACCTTCAACACTGCTGAAGAAGCTGCCAGAGCTTACGACAGAGAAGCTCGGAAGATCCGTGGAAAGAAAGCAAAAGTGAACTTCCCCAACGAGGATGACCACTACTCTATGGAAACTCGTGCTTATAACAATAATAATAATCCACCACCGCCTCTTCCACTCTATCAACAACAACATAGTGCTTACAGCAACAACTTGAACCCAAAGAGTCTGAACCTGGAGTTTGGGTATGATCTGAACCAAGCAGGGGGGGCGATGAATAACCCTGCGGTGATCGGTGCTATCAACTCAGACCCATTTGTCCGGTGTGTTGATGAGATCAGTTCTGAATATGGATCTGGGTCTGGGTCAGGGTCAGTGGGTGGTGGTGGTGGTGGTTACTTGACAACGGAGGTGATAGGATCGTCGAATGTGAATGGGGAAGAGGGGAAGCGTGAAGCAGAAACTCATCATCAAGAACAAGAAGGGAAGAGTAATAGTAGTTATGAAGTGGAGAAGCTTTCGGAGGAGCTGATGGCGTACGAGAACTACATGAGGTTTTATCAGATCCCATTCTATGATGCTCAATCTGCTGCCCCCAACAACAACAACAACAACAATGTTCAAGAAAGTGATGTTGGGGAACTCTGGAGCTTTGATGATGAATGA 975 0.5046 MCGGAIIAEFIPRNRSRRLTASEIWPNTFGKHNDDDDDTDFDGFSHLQRHQPPPPLITPSPRTPPVNEQVEKPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDHYSMETRAYNNNNNPPPPLPLYQQQHSAYSNNLNPKSLNLEFGYDLNQAGGAMNNPAVIGAINSDPFVRCVDEISSEYGSGSGSGSVGGGGGGYLTTEVIGSSNVNGEEGKREAETHHQEQEGKSNSSYEVEKLSEELMAYENYMRFYQIPFYDAQSAAPNNNNNNNVQESDVGELWSFDDE* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3116 324 Pfam AP2 domain 82 130 IPR001471 GO:0003700|GO:0006355
Dod01g3116 324 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
Dod01g3116 324 PANTHER DNA-BINDING DOMAIN 1 323 IPR044808 GO:0003700|GO:0009873
Dod01g3116 324 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Dod01g3116 324 MobiDBLite consensus disorder prediction 246 272 - -
Dod01g3116 324 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Dod01g3116 324 MobiDBLite consensus disorder prediction 298 324 - -
Dod01g3116 324 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Dod01g3116 324 MobiDBLite consensus disorder prediction 26 79 - -
Dod01g3116 324 CDD AP2 82 139 IPR001471 GO:0003700|GO:0006355
Dod01g3116 324 MobiDBLite consensus disorder prediction 29 45 - -
Dod01g3116 324 PANTHER EREBP TRANSCRIPTION FACTOR 1 323 - -
Dod01g3116 324 MobiDBLite consensus disorder prediction 298 315 - -
Dod01g3116 324 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Dod01g3116 324 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Dod01g3116 324 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3116 Dod-Chr1 71913003 71914566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3116 1 139 AP2-EREBP Transcription Factor Family AT3G16770 53.846 6.34e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g3116 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3116 K09286 - gmx:100780763 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3116 01 71913003 71914566 Dod01g3116 01 71913003 71914566 ECH