Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3110 ATGGCCTTGGACGCAGACATGGAAGCAAAGTATGTCCATAACGGCAAGGTCATGCTAGGCTCTGCCATCATTCTCTTCATACTAATTCTCATCATCATTTTCTATCGCACCTACGCCCATGTTTGCACCCGCCGCCGCCGCCACCTCTCCCCTCGCCCACTTTCCACCACTACTTCCTCCTCCGCCTCCGCCAATTTCAACGAACGCCTTGACCCTTCCGTTCTCAAGTCCCTCCCGACCTTCACTTTCTCCTCCGCCGCCCACCGCCCGCTCCACGACTGCGCCGTCTGCCTCTCGGAGTTCGAAGACGGCGAGAAGGGCCGCGTGCTCCCGAACTGCGGCCACGCTTTCCACAGTAACTGCATCGACATGTGGTTCGGCTCTCACTCTAACTGCCCTCTGTGTCGTGCAACGGTCCAACCTGCCACGCCATCATCGACGGTTGAAGAGTGCTCTGTTTCGGTTACGGAAACGGTTGAGGTGGAGGTTGGGGGTTGCTCATCGTCTCTTCCTGCGCCGGTTATGTGTCCCAGAAAGCCGTTAAGTTTGATTGTGGAGGTGCCCGAAGAGGACAGAGGGTTAGATCATCGGATTTTGTCGTTGAAGAGATTTTGCAGCGTGTAG 624 0.5641 MALDADMEAKYVHNGKVMLGSAIILFILILIIIFYRTYAHVCTRRRRHLSPRPLSTTTSSSASANFNERLDPSVLKSLPTFTFSSAAHRPLHDCAVCLSEFEDGEKGRVLPNCGHAFHSNCIDMWFGSHSNCPLCRATVQPATPSSTVEECSVSVTETVEVEVGGCSSSLPAPVMCPRKPLSLIVEVPEEDRGLDHRILSLKRFCSV* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3110 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 143 IPR013083 -
Dod01g3110 207 Pfam Ring finger domain 93 136 IPR001841 -
Dod01g3110 207 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Dod01g3110 207 PANTHER RING-H2 FINGER PROTEIN ATL64 8 162 - -
Dod01g3110 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 162 - -
Dod01g3110 207 SUPERFAMILY RING/U-box 74 143 - -
Dod01g3110 207 CDD RING-H2_PA-TM-RING 93 136 - -
Dod01g3110 207 SMART ring_2 94 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3110 Dod-Chr1 71814367 71815430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3110 11 140 Rapid Response to Elicitors AT3G16720 45.205 3.66e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3110 - - gmx:102665377 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3110 01 71814367 71815430 Dod01g3110 01 71814367 71815430 ECH