Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3097 ATGAGTAGACGTGGGAGCAGAACAGTCTACGTTGGGAACCTCCCTGGTGACATTCGTGAAAGAGAAGTGGAAGATTTGTTTATCAAGTATGGACACATAACTCACATTGACCTCAAGGTTCCACCAAGGCCGCCTGGCTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCCGAGGATGCAATTCGTGGGCGTGATGGTTATGACTTTGATGGTCACCGGTTGCGGGTGGAGCCTGCACATGGTGGGCGAGGTCACTCGTCTTCAAGGGATCGATATAGTAGTCACAGCAATGGTCGGGGTGGACGTGGGGTGTCTAGGCGCTCTGAGTATCGTGTTCTGGTCACTGGATTGCCCTCTTCTGCTTCATGGCAGGATCTTAAAGATCACATGCGAAAGGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGAGGTACTACTGGGATTGTGGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCCGAGTTCCGGAATGCATTTTCCAAGGCTTATGTTCGTGTGAGGGAATATGACTCGAGGCGAGACTCCTCTAGAAGCCCTAGTCGTGGCCCATCCCCTTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGCCGAAGTTACAGTCAGGGCCGGAGCCAAAGCAAATCTCCGAAGGGTAAGTCTACACAGCGTTCACCAGCCAAGTCGAAATCAAGATCTGCTTCTCACTCTCGGTCGAGATCAAGGTCCCGTTCTTTATCAGGATATGGATACTTGCTGCAAACTGGAAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAACAAAGGAGATCATGGATTGCTATTTTAG 897 0.4827 MSRRGSRTVYVGNLPGDIREREVEDLFIKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKAYVRVREYDSRRDSSRSPSRGPSPSRGRSYSRSRSRSYSQGRSQSKSPKGKSTQRSPAKSKSRSASHSRSRSRSRSLSGYGYLLQTGNWKLGTWWDLVQLPATQFVVEIGNKGDHGLLF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3097 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Dod01g3097 298 MobiDBLite consensus disorder prediction 73 107 - -
Dod01g3097 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Dod01g3097 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Dod01g3097 298 Gene3D - 2 110 IPR012677 -
Dod01g3097 298 MobiDBLite consensus disorder prediction 185 252 - -
Dod01g3097 298 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 252 - -
Dod01g3097 298 SUPERFAMILY RNA-binding domain, RBD 6 177 IPR035979 GO:0003676
Dod01g3097 298 MobiDBLite consensus disorder prediction 196 240 - -
Dod01g3097 298 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 252 - -
Dod01g3097 298 CDD RRM2_SF2_plant_like 111 186 - -
Dod01g3097 298 MobiDBLite consensus disorder prediction 73 108 - -
Dod01g3097 298 CDD RRM1_SF2_plant_like 8 78 - -
Dod01g3097 298 SMART rrm1_1 8 78 IPR000504 GO:0003723
Dod01g3097 298 SMART rrm1_1 112 183 IPR000504 GO:0003723
Dod01g3097 298 Gene3D - 111 188 IPR012677 -
Dod01g3097 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3097 Dod-Chr1 71644191 71649768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3097 9 201 Eukaryotic Initiation Factors Gene Family AT4G34110 25.234 4.88e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3097 K12890 - gmx:100789847 354.755