Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3093 ATGAAGTTCTGCAAGAAATACCAAGAGTACATGCAGGGGCAGGAGAAGAAGCTTCCTGGGGTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGAAGTGCAGGAGACGCTGCCAATCCCTCAACGGAGGAGGATCCCTTCCTCTCAAAACCTGCCCTGACCATTGCCCAGTGTGCGATGGAACCTTCTTCCCTTCCCTTCTGAATGAAATGTCAGCGATAGTAGGCTGCTTCAACCAGCGTGCGCAGAAATTGCTGGAGCTACACCTCGCCTCTGGCTTCAGAAAGTACTTTTTCTGGTTCAAAGGCAAATTACAAGGGAACCATACTGCTCTTATTCAGGAAGGCAAGGATCTGGTTATTTATGCACTAATAAATGCCATTGCAATTCGAAAAATACTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAGTTGTTCAAGTCACAGGTCCAGAGTATGCACAAGGAAATTCTTCAGAGTCCATGGTTTTGTGAGCTTATGGCCTTCCACATCAATTTGAGGGAAACCAAGGTCAAGTCAGGGAAGGCACCGGCTTTCTTTGACGGATGTTCTCTAACATTTAAGGATGGGAAACCAGCACTTACTTGTGAGCTCTTTGATTCCATCAAAATTGATCTTGACTTGACTTGTTCCATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGCGGCCATATATTCTGCTATATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTGATGGACTTAAGGCAGCAGATCCTAAAAAGAAATGTCCTCTGTGCCGAGAGAGAGGAGTTTACACAGGGGCTGTGCACTTGGAAGAACTAAATATTCTGCTAGGCCGAAGCTGTCAGGACTACTGGGAGCAAAGGGTCCAGGAAGAGAGGGTAGAGAGGGTTAAGCAAATTAAGGAACACTGGGAATCGCAGTGTAGAGCATTCGTGGGCGTTTAA 972 0.4547 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRRRCQSLNGGGSLPLKTCPDHCPVCDGTFFPSLLNEMSAIVGCFNQRAQKLLELHLASGFRKYFFWFKGKLQGNHTALIQEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWFCELMAFHINLRETKVKSGKAPAFFDGCSLTFKDGKPALTCELFDSIKIDLDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAADPKKKCPLCRERGVYTGAVHLEELNILLGRSCQDYWEQRVQEERVERVKQIKEHWESQCRAFVGV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3093 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 - -
Dod01g3093 323 ProSiteProfiles SPX domain profile. 1 150 IPR004331 -
Dod01g3093 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
Dod01g3093 323 Pfam Zinc finger, C3HC4 type (RING finger) 216 269 - -
Dod01g3093 323 ProSiteProfiles Zinc finger RING-type profile. 219 268 IPR001841 -
Dod01g3093 323 SUPERFAMILY RING/U-box 212 270 - -
Dod01g3093 323 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Dod01g3093 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 321 IPR013083 -
Dod01g3093 323 CDD SPX_BAH1-like 2 146 - -
Dod01g3093 323 SMART ring_2 219 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3093 Dod-Chr1 71593648 71596646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3093 216 268 C3H Transcription Factor Family AT4G28270 41.379 1.12e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3093 K16275 - gmx:100787904 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3093 01 71593648 71596646 Dod01g3093 01 71593648 71596646 ECH
Dod07g0435 07 5763053 5767714 Dod01g3093 01 71593648 71596646 PCT