Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3071 ATGATGACGAAGAGGAAGAGCCAAAGGATTGGGAAGAAGGAGAGGCAGATTAGCAAGTTGAAGATGAAAGGCACTCTCTCTACTACTTCTTCCCATTTGCAGCACCTTCAGCTCGGCCAAGTCTCTCTCTTTCCTTTCCTGCATCAATCTTCCTCTGCTCATTCTTCCCGCTTCCAGAACCTTCTCGAAGCCGAAGCTATCGATCCCAACCCCCCTGCCTCTTCCTCCCTCAACGACCACACCGTCGATGCCACTCTGGACGACAGAGACTTCATTCTCAGCCAGGACTTCTTTTGCACTCCGGATTACATAACCCCGGATAATCAGAACATTTTGAACGGCTTGGATTGCAACATGGAAAATACGCCTTGCCCTAAATCACCGGAGAAGCTAAATACTACGAAAAGCAAGAGATGCCGGCTCGATGCTATCTCTGTAAACCCTCTAAGCCCTACCTTTTCTAGTGACCATCAACAAATTGTGGAACTTGGAAAAGACTCTGTTGCAGAGGAAGTAGCTGTTGAGAAAACAGTTTCTGCTAGTAAACCAAAGGTGCAAAATTATGTGTCACATTCTGCGGTCGCATTGCGTTGCAGGGTTATGCCTCCTCCCTGCATCAAGAACCCCTATTTGAATGATGTTTCAGAAAAGGAAACAGATCCCTTTGGAAACCAAAGATTAAAATGTGCAGGTCTTTTCCCTGCAATCAGCGGTGGTGATGGTCTTTCACGCTATCGCACTGATTTTCATGAGATTGAGCAAATTGGTAGAGGGAACTTTAGTAGTGTCTTCAAAGTATTGAAGCGAATAGATGGATGCTTTTATGCTGTGAAACACAGCACTAGACAGTTACGCCATGAAACAGAAAGGAGAAAAGCTTTGATGGAAGTTCAAGCATTGGCAGCCTTAGGTTCCCATGAGAACATTGTGGGATACTATTCTTCGTGGTTTGAAAATGAACAGCTGTATATTCAGATGGAGCTTTGTGATCACAGCTTATCCATAAACAAATGCTCTGCAGCATTTACAGAAGGAAATGTGTTAGAAGCTTTATATCAGGTTGCAAATGCACTGCGATTTATACATGAGAAGGGAATCGCACATCTGGATGTTAAGCCTGATAATATTTATGTCAAAAACGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTTGTTGATAATAGCCTCCCGGTTGAGGAGGGTGATGCACGTTATATGCCCCAGGAAATCCTTAATGAGAATTACGATCATCTTGAAAAGGTTGATATCTTTTCCTTGGGAGCTTCTATGTATGAGCTCATTCGCCGATTACCTTTGCCAGAGTCAGGATGTCAATTTGTTAATCTTAAAGAGGGCAAGTTTCCACTCCTGCCCGGTCATTCGTTGCAGTTTCAAAACTTGCTCAAGGCCATGATGGATCCTGACCCAGTTAAGCGGCCTTCTGCTAGAGAGTTGTTAGAGAATCCAATTTTTGAAAGGGCCTTTAGAACAACCAAAAGTTGA 1509 0.4374 MMTKRKSQRIGKKERQISKLKMKGTLSTTSSHLQHLQLGQVSLFPFLHQSSSAHSSRFQNLLEAEAIDPNPPASSSLNDHTVDATLDDRDFILSQDFFCTPDYITPDNQNILNGLDCNMENTPCPKSPEKLNTTKSKRCRLDAISVNPLSPTFSSDHQQIVELGKDSVAEEVAVEKTVSASKPKVQNYVSHSAVALRCRVMPPPCIKNPYLNDVSEKETDPFGNQRLKCAGLFPAISGGDGLSRYRTDFHEIEQIGRGNFSSVFKVLKRIDGCFYAVKHSTRQLRHETERRKALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDHSLSINKCSAAFTEGNVLEALYQVANALRFIHEKGIAHLDVKPDNIYVKNGVYKLGDFGCATLVDNSLPVEEGDARYMPQEILNENYDHLEKVDIFSLGASMYELIRRLPLPESGCQFVNLKEGKFPLLPGHSLQFQNLLKAMMDPDPVKRPSARELLENPIFERAFRTTKS* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3071 502 SMART serkin_6 249 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3071 502 PANTHER BNAA08G27310D PROTEIN 74 407 - -
Dod01g3071 502 PANTHER BNAA08G27310D PROTEIN 427 496 - -
Dod01g3071 502 Pfam Protein kinase domain 249 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3071 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
Dod01g3071 502 ProSiteProfiles Protein kinase domain profile. 249 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3071 502 ProSitePatterns Protein kinases ATP-binding region signature. 255 278 IPR017441 GO:0005524
Dod01g3071 502 Gene3D Transferase(Phosphotransferase) domain 1 328 498 - -
Dod01g3071 502 SUPERFAMILY Protein kinase-like (PK-like) 242 494 IPR011009 -
Dod01g3071 502 Gene3D Phosphorylase Kinase; domain 1 240 327 - -
Dod01g3071 502 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 74 407 - -
Dod01g3071 502 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 427 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3071 Dod-Chr1 71433631 71437828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3071 1 495 Core Cell Cycle Gene Families AT1G02970 60.643 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Dod01g3071 Pkinase 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3071 K06632 - gmx:547742 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3071 01 71433631 71437828 Dod01g3071 01 71433631 71437828 ECH