Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3067 ATGGGTGATATTATAGGCAAAGGGTCAGACATAGAAGGCTTTGGGGTGGTTAAAGAGCAAGACCAGTTGCTTCCAATAGCTAACGTGGGACGGATTATGAAGCAAATTTTGCCTGCTAACGCCAAAATCTCAAAGGAAGCTAAAGAAACCATGCAAGAATGTGTTTCCGAGTTCATTAGCTTTGTTACCGGGGAGGCCTCAGACAAGTGTCAAAAGGAGAAGCGCAAGACGGTAAACGGAGACGATGTTTGCTGGGCGTTCGCCACCCTAGGGTTTGATGATTACGCTCAGCCACTCAAAAGGTATTTGCATAAGTATAGGGAATCGGAGGAGGAGAGAGTTAATCAAAATAAAGCTAACAATAGTGATGAAAATACATAA 381 0.4357 MGDIIGKGSDIEGFGVVKEQDQLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFVTGEASDKCQKEKRKTVNGDDVCWAFATLGFDDYAQPLKRYLHKYRESEEERVNQNKANNSDENT* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3067 126 Gene3D Histone, subunit A 15 126 IPR009072 GO:0046982
Dod01g3067 126 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod01g3067 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 86 IPR003958 -
Dod01g3067 126 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 15 124 - -
Dod01g3067 126 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Dod01g3067 126 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Dod01g3067 126 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Dod01g3067 126 SUPERFAMILY Histone-fold 20 121 IPR009072 GO:0046982
Dod01g3067 126 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod01g3067 126 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3067 Dod-Chr1 71376033 71376413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3067 16 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.373 1.11e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod01g3067 CBFD_NFYB_HMF 3.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3067 K08065 - gmx:100796514 202.601