Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3064 ATGGCAACAAATAGATTCGTGTGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGGGGTCACAATCTTCCTTGGAAACTCAGGCAGAGAACAAGCACCGAGGTGAAGAAACGGGCCTACGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTGGGAGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTTCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGTACCAGGGAGTACAAATGTGACTGCGGAACCATATTTTCCAGGTACAATATCCTTGCATTTTCAATTCTACGTACACAAAAATACATATGA 405 0.4543 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRAYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRYNILAFSILRTQKYI* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3064 134 Gene3D Classic Zinc Finger 6 45 - -
Dod01g3064 134 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 120 - -
Dod01g3064 134 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Dod01g3064 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Dod01g3064 134 Gene3D Classic Zinc Finger 46 127 - -
Dod01g3064 134 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Dod01g3064 134 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Dod01g3064 134 Pfam Zinc finger, C2H2 type 83 103 IPR013087 -
Dod01g3064 134 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 120 - -
Dod01g3064 134 SMART c2h2final6 47 77 IPR013087 -
Dod01g3064 134 SMART c2h2final6 6 28 IPR013087 -
Dod01g3064 134 SMART c2h2final6 82 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3064 Dod-Chr1 71352624 71353028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3064 1 119 C2H2 Transcription Factor Family AT2G02080 82.353 1.09e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g3064 zf-C2H2_jaz 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3064 - - gmx:100782774 265.003