Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3053 ATGGAGTTGTACGGTCGCAACCAGCCCAGAAACGGGTCCAACCCGGGGAATCAACCCGAATGGCGCTCGCCGGGACCCGATACTGGTCTCGAAGAATCGATGTGGCAGTTGACGCTGGGAGGTGGTGGTAGCAGCGAGTCGTACCCGGAGCGACCCGGTGCTCCGAATTGCGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTGGAAGGTGCCGTTACAATCACCCTCGTGATCGTGCCGCGGTTGCTGCTGCTGTAAGAGCTACAGGGGAGTACCCAGAAAGAGTGGGGGAACCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAAACACGGAGGTGGATCTTTAAGCCAAGCACCACTAAATATTTATGGATACCCATTACGGCCGGGTGAGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACGTGTAAATTCCATCATCCTCAACCTGCTGGCACCTCATTGCCAGCTTCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCCTGACCAATATGGAGGAGCATCCTCAAGCTTGAGAGTGGCTAGGCCTCCTATGATGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCTGGGGTTGTTCCATTTCCTGGATGGAGTCCTTACTCGGCACCTGTAAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGGTACATCTCTATACGGAATGACGCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTGCCTTCTTCTATTGGCCCTTCAGGAAGTGTCCAAACCGAACAAGTATTTCCTGAAAGACCTGGGGAACCTGAATGCCAGTACTATCTGAGGACAGGGGACTGTAAATTTGGATCAGCTTGTCGATATCATCACCCTCGGGACAGGGTTGTGACACGGCCACTTCTCAGCCCCATTGGTCTTCCGCTACGTCCGGTAAGCATGTTTACTAACTTGATTTGA 1059 0.5033 MELYGRNQPRNGSNPGNQPEWRSPGPDTGLEESMWQLTLGGGGSSESYPERPGAPNCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPDQYGGASSSLRVARPPMMPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGGTSLYGMTQLSSSTSAFARPYTPLPSSIGPSGSVQTEQVFPERPGEPECQYYLRTGDCKFGSACRYHHPRDRVVTRPLLSPIGLPLRPVSMFTNLI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3053 352 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Dod01g3053 352 SUPERFAMILY CCCH zinc finger 144 170 IPR036855 GO:0046872
Dod01g3053 352 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Dod01g3053 352 SUPERFAMILY CCCH zinc finger 99 123 IPR036855 GO:0046872
Dod01g3053 352 SUPERFAMILY CCCH zinc finger 303 328 IPR036855 GO:0046872
Dod01g3053 352 PANTHER PROTEIN PHOSPHATASE RELATED 1 344 - -
Dod01g3053 352 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Dod01g3053 352 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Dod01g3053 352 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Dod01g3053 352 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Dod01g3053 352 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Dod01g3053 352 MobiDBLite consensus disorder prediction 1 50 - -
Dod01g3053 352 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Dod01g3053 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 99 123 IPR000571 GO:0046872
Dod01g3053 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 78 IPR000571 GO:0046872
Dod01g3053 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 326 IPR000571 GO:0046872
Dod01g3053 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 169 IPR000571 GO:0046872
Dod01g3053 352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 344 - -
Dod01g3053 352 MobiDBLite consensus disorder prediction 7 21 - -
Dod01g3053 352 SUPERFAMILY CCCH zinc finger 56 80 IPR036855 GO:0046872
Dod01g3053 352 Gene3D - 130 176 - -
Dod01g3053 352 Gene3D - 287 334 - -
Dod01g3053 352 Gene3D - 49 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3053 Dod-Chr1 71229878 71235879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3053 1 344 C2H2 Transcription Factor Family AT5G18550 52.778 1.31e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod01g3053 zf-CCCH 3.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3053 - - lja:Lj5g3v1665190.1 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3053 01 71229878 71235879 Dod01g3053 01 71229878 71235879 ECH