Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3044 ATGGAACAATCTTCTTTATCCACTGCTCCTGAAACTGACGATAGCAGAGAGCACTTTGGGAAATTGCAGTTCGGATGCGAACACTACAAGAGACGTTGCAAAATTCGTGCCCCCTGCTGCAATCAGATCTTCCCTTGCCGTCACTGCCACAACGACGCCATGAGCTCACTTAGCAACCCCATGGATCGTCATGAACTTGTCAGACAAGATGTTAAGCACGTTATATGCTCTGTCTGTGATACTGAGCAGGAGGTTGCCAAGGTGTGTTCTAACTGTGGCGTCAACATGGGAGAATACTATTGTGATATTTGCAAATTCTATGATGATAATACAGAAAAAGGACAATATCATTGTGACGAATGTGGGATTTGCAGGGTTGGTGGTCGTGATAACTTCTTTCACTGTCAAAAATGCGGCTCTTGCTATTCACTGAGCCTGCGAAACAACCACTTATGTATAGAGAATTCAATGAGGAGTTTCTGTCCTGTCTGTTATGAGTATCTCTTTGATTCGATAAAAGGCACCACAATTTTGAGGTGTGGACACACAATGCATACAGAATGCTATCAGGAGATGGCAACCCAAAATCAGTACCGTTGTCCTCTTTGCTCGATGTCAATGTTTGATATGTCTGAAAGCTGGGAACATTTAGATCGGGAGATTGAAGCTGTTCCCATCCCCGAGGAGTATAATTCTGAGGTTTCGATTCTTTGCAATGATTGTAACACTACAAGCACAGTTTTCTTTCACATATTTGGTCACAAGTGCAGACAGTGCAGTTCGTACAACACTCGCAGAATTACTCTGCCGGATAGACAGTGA 822 0.4343 MEQSSLSTAPETDDSREHFGKLQFGCEHYKRRCKIRAPCCNQIFPCRHCHNDAMSSLSNPMDRHELVRQDVKHVICSVCDTEQEVAKVCSNCGVNMGEYYCDICKFYDDNTEKGQYHCDECGICRVGGRDNFFHCQKCGSCYSLSLRNNHLCIENSMRSFCPVCYEYLFDSIKGTTILRCGHTMHTECYQEMATQNQYRCPLCSMSMFDMSESWEHLDREIEAVPIPEEYNSEVSILCNDCNTTSTVFFHIFGHKCRQCSSYNTRRITLPDRQ* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3044 273 Gene3D - 231 272 - -
Dod01g3044 273 Pfam CHY zinc finger 26 106 IPR008913 GO:0008270
Dod01g3044 273 ProSiteProfiles Zinc finger RING-type profile. 161 204 IPR001841 -
Dod01g3044 273 SUPERFAMILY RING/U-box 160 208 - -
Dod01g3044 273 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 18 267 - -
Dod01g3044 273 Pfam Zinc-ribbon 208 265 IPR039512 -
Dod01g3044 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 223 IPR013083 -
Dod01g3044 273 SMART ring_2 161 203 IPR001841 -
Dod01g3044 273 ProSiteProfiles Zinc finger CHY-type profile. 19 94 IPR008913 GO:0008270
Dod01g3044 273 SUPERFAMILY CHY zinc finger-like 22 95 IPR037274 GO:0008270
Dod01g3044 273 Pfam Ring finger domain 161 203 IPR001841 -
Dod01g3044 273 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 18 267 IPR031109 GO:0008270|GO:0016567
Dod01g3044 273 SUPERFAMILY Zinc hairpin stack 97 154 IPR037275 -
Dod01g3044 273 ProSiteProfiles Zinc finger CTCHY-type profile. 96 160 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3044 Dod-Chr1 71165763 71169778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3044 24 270 C2H2 Transcription Factor Family AT3G18290 42.802 5.25e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3044 K10144 - gmx:100818374 467.618