Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3043 ATGAGTAGTTCTTCTCCAAAAAGACACTCTCACCCTAATCAAAATTCAACACACAAAAAAGAACATGAAGATAACAAATCAGCTTGTGACTACTGTGGCAACTCAAGAGCACTTCTCTATTGCAGAGCTGATTCAGCGAAGCTCTGTTTCTCGTGTGACCGTGAAGTTCACTCCACAAACCAGCTCTTCTCCAAGCACACTCGCGTCCTCCTCTGTGACTCCTGCAACCATTCCCCTGCTTCCATACTCTGCTCCACAGAGTCCTCTGTTCTCTGCCAGAACTGTGACTGGGAAAGGCACAACCTTTCCCTCTCCCCTGTTCACGAGAGAGGCCCCCTTGAAGGATTCACTGGGTGCCCTTCTGTTACAGAGCTCTTAACTATTGTGGGGTTCGAAGATACTGGGAAAAAGGCTCTTCTTTCTGATGAGGGCAGTGCAGGGTGTGGTGTTGATGGTGACGGGTTTATTGGGTGCGAGATTGAAGGGATTTCGGATTTGTTTGTTTGGGATGCTCCTTCTGTTGTTAGTCTTGATGATTTGATTTCTTCTTCTGGTTCTTCACATAACTTCCAGGCTATGGAGGTTCCTCCTCTGCCCAAGAATCGTAAGGCTGCTTGTGGGAGACACAAAGAAGAAATTCTTAGCCAGCTTCGTGAACTAGCGAAGTGTGAGCCCTTGGACACTGAACAACAATATCTGCAATCACGGAATTTGTCCACAGATCTTGAACGTGACTTAAAGGCTGATGATTTATTTCCTTCGTATGAGTGGCATAGAGAAAGTAATGAGGCTATAAATCAGGTTGTTCCTTCGGACATGTCATTAAGAGCTTGTACCGAAGAAGTTGCAGCTAAACATTCAACTTCTTCTGTTTGGGAGACTCATACTTATACCTATGACAACAATGAAGGGATGCCACTGCCTATCTCTCTCCAGTCTGAATCCTTATCAACTACTCCAAAAGCTGCTCCGTGTGAGTTAACGAGTCAAGAAAGAGATTCTGCATTATTGCGGTACAAGGAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTCGGGCACAAAGCAGGATCAGAGTTAAGGGCCGATTTGCCAAGATGGAACACTGA 1131 0.45 MSSSSPKRHSHPNQNSTHKKEHEDNKSACDYCGNSRALLYCRADSAKLCFSCDREVHSTNQLFSKHTRVLLCDSCNHSPASILCSTESSVLCQNCDWERHNLSLSPVHERGPLEGFTGCPSVTELLTIVGFEDTGKKALLSDEGSAGCGVDGDGFIGCEIEGISDLFVWDAPSVVSLDDLISSSGSSHNFQAMEVPPLPKNRKAACGRHKEEILSQLRELAKCEPLDTEQQYLQSRNLSTDLERDLKADDLFPSYEWHRESNEAINQVVPSDMSLRACTEEVAAKHSTSSVWETHTYTYDNNEGMPLPISLQSESLSTTPKAAPCELTSQERDSALLRYKEKKKTRRYDKHIRYESRKVRAQSRIRVKGRFAKMEH* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3043 376 ProSiteProfiles CCT domain profile. 332 374 IPR010402 GO:0005515
Dod01g3043 376 MobiDBLite consensus disorder prediction 1 26 - -
Dod01g3043 376 ProSiteProfiles Zinc finger B-box type profile. 67 113 IPR000315 GO:0008270
Dod01g3043 376 Pfam B-box zinc finger 25 70 IPR000315 GO:0008270
Dod01g3043 376 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 24 376 - -
Dod01g3043 376 ProSiteProfiles Zinc finger B-box type profile. 24 71 IPR000315 GO:0008270
Dod01g3043 376 CDD Bbox1_BBX-like 28 71 - -
Dod01g3043 376 Pfam CCT motif 332 374 IPR010402 GO:0005515
Dod01g3043 376 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 24 376 - -
Dod01g3043 376 SMART bboxneu5 72 113 IPR000315 GO:0008270
Dod01g3043 376 SMART bboxneu5 24 71 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3043 Dod-Chr1 71154699 71158797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3043 29 347 C2C2-CO-like Transcription Factor Family AT2G47890 42.651 1.82e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dod01g3043 zf-B_box 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3043 - - gmx:100817838 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3043 01 71154699 71158797 Dod01g3043 01 71154699 71158797 ECH