Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3034 ATGAGGAACATGAGAGAGATGAACAAGCTTGCAGCTGCAGGCACTCCCAACTCTTCTCGAAGCGCCGCTTCCTTATCATCATCATCCGCCTCCGCAAACATTAATCAAGGTGGGAAAGATAGGTTGTATGGTGAAGTGTGGCGTGCATGCGCGGGGGGGTCCGTACATATTCCTCGGTGTGGGGAGAAGGTGCTGTACTTCCCACAAGGCCACTTGGAGCAGGTTGCTGCATTTATTCAACATCAGCAAGATGGTCACATGGATATTCCTGTACATAATCTGCCTTCTAAGATCCTTTGCAGGGTTGTATCTGTTCAGTTGAAGGCTGAAGCTTACACAGACGAGGTTTTTGCTCAAATTACTTTACTTCCTGAGCTCAAGCAAGATGAACTTAATTGTGAGGGTACAGGCACTGATAAGATACCCAGCAGAGCTTCTGCCTACTCATTTTGCAAGATCCTCACTCCATCAGACACAAGTACACACGGTGGATTCTCTGTTCCCAAGAGACATGCAGTTGGATGCTTCCCTTGTCTGGACCTGTCTCTTGAACCGCCAACACAAGAGCTGGTTGCAAAGGACTTACATGGGTTTGAGTGGCACTTTCGGCAAATATATCGGGGTCAGCCAAAACGACACTTGCTGACCAGCGGTTGGAACACATTTTTGAATGCTAAAAAGCTTGTTGCTGGAGACACATGCGTTTTCATTAGAGGAGAAAATGGAGAACTTCGTGTTGGGATTCGCCGTGCTTTGAAACAGCATAACAATGCATCCACTTCTACATCTCTAATATCAGGTGATAGCATGCAACTGGGAATCCTGGCTAGTGCTTCTCATGCTGTTGCCACAGGATCCATGTTCACTGTCTACTACCACCCTTGGACAAATCCCTTTGAATTTATCATTCCTCTGAAACACTACCTGAAGGCAGCTGAAATGAACTTTTCAGCTGGAATGAGAGTACAAATGCTGCTTGAAGTTGAAGAATCTAAAAGAAGAGATGCAGGTACGATAATTGGTGTTGAAGATATTGATGGCAGTAGGTGGCCTGGTTCAGAATGGAGATGTCTCAAGGTGCAATGGGATGCCATACAAGATTCTTCTATGCATGCTGAAAGGGTCTGCCCTTGGTGGATTGAGCCCTTGGACTCTGCCAAGCCGAAACACTCCCCTATTCTCCCCCCACCAAAGAAAGCACGAGTACCTAACCTGCCACTGCCTGGATTAGGTGGCTTTGCCAAGGATGACATAGTTCAGAATTCTGCCAAGCCTGCATCTCAGAGAGTGGAAAGGGACTTACATGGTCAAGATTACAATGCCGTTGCTTCACCACAGGCGTCCCCATCAAAGGCAATTTATGACCCAAAGCTGGGGGTGGAGAATCAGCTTCGCTTTCTTTTGCAAGACCCTCTTCACCAATCTACTGGCAGCTCAATGTTGATTCCACTTGAAGACTTGTCAACTTCTAGTTCAAATGTGAACTGCACTGGCTCTGAATCTCAGGGATGGTCTTCTTCTGAATCTAAAGATGAAAATGATGTTCCTTTTGGCCAACCTGGCAGTCATAGAACATACAAGCTTTTTGGCGTTAGCTTGGGTGATAACCAACCGGAGCTCCCTTCACCACAATTTGCTAAGATTCGAAGTACCCTTTCCATTCCTCCAATGTCTCAGTCAAGAATTTATGCAACTATCCGGGCTACAAAACCATACGGAAATATTCCAGGTGTTACTGCAGGAAAAACATGCAAGAAGTGCCTTGCTGTTAATAGTAGGAGTTGTACAAAGGTGCTTAAGCAAGGAACTGCACTTGGCAGAGCAATTGACCTCACTCGTTTTACTGGATATTACGAACTCATTTCTGAACTTGACTGGATGTTTGACTTCGGAGGAAGCTTAATTAATGGAAGCAGTGGATGGCATGTCACCTGCGTAGATGATGATGGAGATGTTATGCTGTTAGGCGATTCCCCATGGCAGAATTTCCAGTCCATTGTGCAAAAGATGATCATATGTCCAAAGGATGGTATTAACCATCCCAGTCCAAGCTCCTCTGCATGTCCTACAAGCACTTAG 2079 0.4589 MRNMREMNKLAAAGTPNSSRSAASLSSSSASANINQGGKDRLYGEVWRACAGGSVHIPRCGEKVLYFPQGHLEQVAAFIQHQQDGHMDIPVHNLPSKILCRVVSVQLKAEAYTDEVFAQITLLPELKQDELNCEGTGTDKIPSRASAYSFCKILTPSDTSTHGGFSVPKRHAVGCFPCLDLSLEPPTQELVAKDLHGFEWHFRQIYRGQPKRHLLTSGWNTFLNAKKLVAGDTCVFIRGENGELRVGIRRALKQHNNASTSTSLISGDSMQLGILASASHAVATGSMFTVYYHPWTNPFEFIIPLKHYLKAAEMNFSAGMRVQMLLEVEESKRRDAGTIIGVEDIDGSRWPGSEWRCLKVQWDAIQDSSMHAERVCPWWIEPLDSAKPKHSPILPPPKKARVPNLPLPGLGGFAKDDIVQNSAKPASQRVERDLHGQDYNAVASPQASPSKAIYDPKLGVENQLRFLLQDPLHQSTGSSMLIPLEDLSTSSSNVNCTGSESQGWSSSESKDENDVPFGQPGSHRTYKLFGVSLGDNQPELPSPQFAKIRSTLSIPPMSQSRIYATIRATKPYGNIPGVTAGKTCKKCLAVNSRSCTKVLKQGTALGRAIDLTRFTGYYELISELDWMFDFGGSLINGSSGWHVTCVDDDGDVMLLGDSPWQNFQSIVQKMIICPKDGINHPSPSSSACPTST* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3034 692 MobiDBLite consensus disorder prediction 489 519 - -
Dod01g3034 692 CDD B3_DNA 149 250 IPR003340 GO:0003677
Dod01g3034 692 SUPERFAMILY DNA-binding pseudobarrel domain 142 280 IPR015300 -
Dod01g3034 692 SMART B3_2 150 252 IPR003340 GO:0003677
Dod01g3034 692 Pfam AUX/IAA family 634 672 IPR033389 -
Dod01g3034 692 MobiDBLite consensus disorder prediction 422 450 - -
Dod01g3034 692 Gene3D - 148 252 IPR015300 -
Dod01g3034 692 Pfam Auxin response factor 278 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod01g3034 692 MobiDBLite consensus disorder prediction 12 34 - -
Dod01g3034 692 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Dod01g3034 692 MobiDBLite consensus disorder prediction 489 513 - -
Dod01g3034 692 PANTHER AUXIN RESPONSE FACTOR 30 685 - -
Dod01g3034 692 Gene3D - 315 388 - -
Dod01g3034 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 685 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod01g3034 692 MobiDBLite consensus disorder prediction 1 34 - -
Dod01g3034 692 Gene3D - 589 680 - -
Dod01g3034 692 ProSiteProfiles PB1 domain profile. 593 676 IPR000270 GO:0005515
Dod01g3034 692 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Dod01g3034 692 SUPERFAMILY CAD & PB1 domains 595 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3034 Dod-Chr1 71053333 71060967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3034 591 688 B3 DNA Binding Superfamily AT5G62000 44.898 1.21e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod01g3034 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3034 - - lja:Lj1g3v4764520.2 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3034 01 71053333 71060967 Dod01g3034 01 71053333 71060967 ECH