Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3030 ATGGCGGAAGGGAAGGAAGAGAGCAAATCCAGCGAGGAGAGTGTGAAGCTGTTCGTAGGTCAGGTTCCGAAGCACATGACGGAATCGGAGCTGCTCGCAATGTTCAAGGAGTTCGCCTTGGTCGACGAGGTCAACATCATCAAGGACAAGGCCACGCGCGCTTCTCGAGGTTGCTGCTTCGTGATTTGTCCGTCGAGGGAAGAGGCTGATAAGGCCGTCAATGCCTGTCATAATAAGAAAACATTGCCAGGGGCTGCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATCGGCATGCTTCCAAAGAATGTTTCCGAAGTTGAAGTCTCTGCTCTTTTCTCCCAGTTTGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCCCTTGCCGCTCTGGAAGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAGAGCACAGTCCCAAGCTTCCAACGTGCCACATGCTGATTCTCAGCACCCATCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCGTATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCATACCGAATGCCACCAATGCAGAATCAACCTGGTTTCCATAACATGATGCCACATATGAGTCAAGCAACTGCATTGCGGCCAGATCTTGGCCCCAATATGAACCCTAGAAATTATGCTGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGCATACCCTGGAGGAATGATTAGTCCAAGGCCTATGAGTAGTTCTCCTGGTTCCATTTCACCTGCAGGTGGAAATAGCAGCTCTGGTACATCTTCAAGTGCCGGCAAAAGTTCTGGTGGTCAGGTTGAAGGACCACCCGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGATCAAGAGCTTGCGAATGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTGGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCTCCAGAAGCTGCTCAAGCTGCCATTAGTATGATGAACGGATTCCAATTAGTAGGTGATAAGGGGAATCTGGTTTACACCGACCACTGTCTATCGCTGAGCCTATTAGCCAATTGTCAGCAGCATCATGGAAATTATGTGTATTCTCGGAGATACACGGTTTCGAACTAA 1356 0.4572 MAEGKEESKSSEESVKLFVGQVPKHMTESELLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSREEADKAVNACHNKKTLPGAASPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSQFGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQRAQSQASNVPHADSQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRMPPMQNQPGFHNMMPHMSQATALRPDLGPNMNPRNYAVPPASYVGSYPAVPGLQHPMAYPGGMISPRPMSSSPGSISPAGGNSSSGTSSSAGKSSGGQVEGPPGANLFIYHIPQEYGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQAAISMMNGFQLVGDKGNLVYTDHCLSLSLLANCQQHHGNYVYSRRYTVSN* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3030 451 MobiDBLite consensus disorder prediction 309 337 - -
Dod01g3030 451 SMART rrm1_1 347 422 IPR000504 GO:0003723
Dod01g3030 451 SMART rrm1_1 16 92 IPR000504 GO:0003723
Dod01g3030 451 SMART rrm1_1 104 179 IPR000504 GO:0003723
Dod01g3030 451 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Dod01g3030 451 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Dod01g3030 451 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Dod01g3030 451 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Dod01g3030 451 Gene3D - 101 192 IPR012677 -
Dod01g3030 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Dod01g3030 451 MobiDBLite consensus disorder prediction 302 340 - -
Dod01g3030 451 MobiDBLite consensus disorder prediction 185 208 - -
Dod01g3030 451 Gene3D - 2 100 IPR012677 -
Dod01g3030 451 CDD RRM3_CELF1-6 348 416 - -
Dod01g3030 451 CDD RRM1_2_CELF1-6_like 16 92 - -
Dod01g3030 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 427 IPR000504 GO:0003723
Dod01g3030 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Dod01g3030 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Dod01g3030 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 412 IPR000504 GO:0003723
Dod01g3030 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Dod01g3030 451 SUPERFAMILY RNA-binding domain, RBD 103 415 IPR035979 GO:0003676
Dod01g3030 451 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 418 - -
Dod01g3030 451 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Dod01g3030 451 CDD RRM1_2_CELF1-6_like 104 179 - -
Dod01g3030 451 PANTHER RNA BINDING PROTEIN 7 418 - -
Dod01g3030 451 MobiDBLite consensus disorder prediction 193 207 - -
Dod01g3030 451 Gene3D - 317 419 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3030 Dod-Chr1 71021093 71028306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3030 346 409 Eukaryotic Initiation Factors Gene Family AT2G23350 35.938 3.59e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3030 K13207 - gmx:100813239 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3030 01 71021093 71028306 Dod01g3030 01 71021093 71028306 ECH