Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3012 ATGGCGTCAAGATTTTGGACTCAGGGTGGTGATAGTGATACTGAGGAAGAGAGTAGTGATTATGATGAGGAGGTCGAAACAGTTGTTGAATCTGGCGGCCAAGCTGCCACTAGCAAGTACTTGCAGGTCAATGCGAGTGACTCTGATGACTCTGATGGGCAAAAGCGTGTTGTCCGGTCTGCGAAAGATAAACGGTTCGAGGAGATGGCTGCTACTGTTGATCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAGGAGAGCTTTGATAAGATCAACAAGCAGCTTGAGAAGGTCATGCGTGTTACTGAGTCTGAGAAGGTCCCCAATCTCTACATTAAGGCCCTTGTGATGTTGGAGGATTTCTTGGCTCAGGCTATGGCCAACAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAGGCGCTCAACTCGATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTACGAGGAATTGATTAACAAGTGCAGGGAGAATCCTGAGAGTGACGATGAGAAGGAGGAGGAGGAGTCTGAGGAAGAGTATGAGAGTGATGATGAGATTATCGACCCTGACCATCTCAAGGGAAGAGGGGATATGAAATCAGATTCGGAAGTTTCTCATTCTGGTGATGAAAAGCCAGATGCTTCTGATGGACCTTGGGACCAAAAGCTTAGCAAGAAAGACAGGCTTATGGATAGGCAATTTATGAAGGATCCTAGCGAGATCACTTGGGACACAGTTAACAAGAAGTTCAAGGAGGTTGTGGCAGCTAGGGGCAGGAAGGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACTTTCCTGACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTTAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCTTAAGTGGGCATATGCCTATAAATGTTTGGAAAAAATGTGTGCAGAACATGCTGGTCATTCTCGATATCCTAGCACAGTACCCTAACATTGTGGCAGATGATGCTGTGGAGCCAGATGAGAACGAAAGTCAGAAAGGACCCGACTATAATGGAACAATTCGGGTTTGGGGTAACCTGGTTGCTTTCTTAGAAAGAATTGATGCTGAATTTTTCAAGAGCCTGCAGTGCATTGATCCTCACACCCGTGACTATGTTGAGAGACTCAGGGATGAGCCAATGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATACCTTGAAAGGGCTGGAGATTTCAAAGCTTCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTGTATGATGCCATGAGAAAATTGGTTGACCTGACAGAAGATGGAGATAATGAAGGTGGGGCTAGTGAGGAGAAAGGGTTTGAGGAGACAAGAATTCCCACTGCATTTGTTGTTACTCCAGAACTTGTGCGCCGCAAACCCACCTTCCCTGAGAATAGCAGGACCCTAATGGATATATTGGTATCACTGATTTACAAATATGGAGACGAGCGCACGAAAGCAAGGGCAATGCTCTGTGATATATATCATCATGCTATTCTTGATGAGTTCTCAATAGCCCGTGATCTGCTGCTTATGAGCCATTTGCAAGACAGTGTTCAGCATATGGACATCTCAACACAGATACTTTTTAACAGGGCTATGGCACAGTTGGGCCTATGTGCTTTCCGGGTTGGACTGATTTCTGAAGCACAAGGCTGTCTGTCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTGTGGCTCAAAGTCGTTATCATGAGAAAACTCCAGAACAGGAAAGGTTGGAAAGAAGACGCCAGATGCCTTATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTATATCTGCTATGCTGCTTGAAGTTCCCAATATGGCTGCCAATGTCCATGATGCAAAGCGCAAGGTCCTTAGTAAGACTTTCCGCCGCTTGCTTGAGATCAGTGAGAAGCAAACATTCACTGCTCCACCTGAAAATGTCAGGGATCATGTTATGGCTGCCACAAGGGCTCTTAGCAAGGGAGACTTCCACAAGGCCTTTGATATTATTGTTTCTCTTGATGTATGGAAGTTTGTTAGAAATCGAGACACTGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTGAGGACATATCTCTTTACATTCTCCTCAGCTTATGATTCTTTGAGCATGGATCAACTCACAAAAATTTTTGACCTCTCTGTTCCTCACACTCACAGCATTGTTAGTAGGATGATGGTCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACCGGGTGCATTGTTTTCCAAGATGTTGAGCACTCTAGGTTGCAGGCATTAGCATTCCAGTTGACAGAAAAGTTATCTATCCTTGCAGAGAGCAATGAAAGAGCAATGGAGGCAACAACAGGTGGTGGTGGATTGGATCTGCCTCTGAGGCGTAGAGACGGCCAGGACTATGCTGCTGCTGCTGCTGGTGGTGGAACAGCTTCTTCAGGTGGTAGGTGGCAGGACTTGTCCTTTTCTCAGCCAAGGCAAGGTGGTGGACGATATGGTAGTGGACGTGGAAGGCCAGTGGCTTTAGGCCAAGCAGCTGGGAGCGGATATTCAAGGGACCGATCGGGACGAGGAACAGGTTCAGGTCGGTATCAAGACTCATATGGAGGTTCCGGGAGGACTCAAGGTGGTTCGTCATTGAGGGGACCCCATGGGGATGTAACATCTCGCATGGTTAGCCTTAAGGGAGTACGTGCTTAA 2811 0.465 MASRFWTQGGDSDTEEESSDYDEEVETVVESGGQAATSKYLQVNASDSDDSDGQKRVVRSAKDKRFEEMAATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQAMANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESDDEKEEEESEEEYESDDEIIDPDHLKGRGDMKSDSEVSHSGDEKPDASDGPWDQKLSKKDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILAQYPNIVADDAVEPDENESQKGPDYNGTIRVWGNLVAFLERIDAEFFKSLQCIDPHTRDYVERLRDEPMFLVLAQNVQEYLERAGDFKASSKVALRRVELIYYKPQEVYDAMRKLVDLTEDGDNEGGASEEKGFEETRIPTAFVVTPELVRRKPTFPENSRTLMDILVSLIYKYGDERTKARAMLCDIYHHAILDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMAQLGLCAFRVGLISEAQGCLSELYSGGRVKELLAQGVAQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKRKVLSKTFRRLLEISEKQTFTAPPENVRDHVMAATRALSKGDFHKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSAYDSLSMDQLTKIFDLSVPHTHSIVSRMMVNEELHASWDQPTGCIVFQDVEHSRLQALAFQLTEKLSILAESNERAMEATTGGGGLDLPLRRRDGQDYAAAAAGGGTASSGGRWQDLSFSQPRQGGGRYGSGRGRPVALGQAAGSGYSRDRSGRGTGSGRYQDSYGGSGRTQGGSSLRGPHGDVTSRMVSLKGVRA* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3012 936 SMART PINT_4 721 809 IPR000717 -
Dod01g3012 936 MobiDBLite consensus disorder prediction 13 27 - -
Dod01g3012 936 Gene3D - 727 796 IPR036388 -
Dod01g3012 936 MobiDBLite consensus disorder prediction 891 919 - -
Dod01g3012 936 MobiDBLite consensus disorder prediction 193 238 - -
Dod01g3012 936 MobiDBLite consensus disorder prediction 839 936 - -
Dod01g3012 936 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 935 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dod01g3012 936 MobiDBLite consensus disorder prediction 851 865 - -
Dod01g3012 936 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Dod01g3012 936 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dod01g3012 936 Pfam PCI domain 660 788 IPR000717 -
Dod01g3012 936 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Dod01g3012 936 MobiDBLite consensus disorder prediction 1 58 - -
Dod01g3012 936 MobiDBLite consensus disorder prediction 167 238 - -
Dod01g3012 936 Coils Coil 144 171 - -
Dod01g3012 936 MobiDBLite consensus disorder prediction 175 192 - -
Dod01g3012 936 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
Dod01g3012 936 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 935 - -
Dod01g3012 936 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dod01g3012 936 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3012 Dod-Chr1 70832392 70836403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3012 1 936 Eukaryotic Initiation Factors Gene Family AT3G56150 68.085 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3012 K03252 - gmx:100779751 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3012 01 70832392 70836403 Dod01g3012 01 70832392 70836403 ECH