Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3008 ATGAGCAACTTAACCAGCGGACTTCGAACGACGACTGAGAAGCTGAAGGTGAAACCGAAGACTAAGAGGCTAAAGCTGAAGAGGACTTCGAACGAGCAAGCCGTCCCAAAACCTAGCTCCCTCCTCTACCACTTCGCCAACGATCCGCTCAGGATGGATTCTGGGATTAAGCATGCTATTGTTGTCAAGGTTATGGGCCGTACTGGCTCCAGAGGACAGGTGACCCAGGTTAGAGTGAAGTTCTTGGATGATCAGAACAGGCACATTATGAGGAACGTGAAAGGACCAGTGAGAGAGGGAGACATTCTCACCCTTCTCGAGTCTGAAAGAGAAGCAAGAAGGTTGCGCTAG 351 0.5043 MSNLTSGLRTTTEKLKVKPKTKRLKLKRTSNEQAVPKPSSLLYHFANDPLRMDSGIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3008 116 PANTHER 40S RIBOSOMAL PROTEIN S28 52 116 - -
Dod01g3008 116 MobiDBLite consensus disorder prediction 1 35 - -
Dod01g3008 116 Pfam Ribosomal protein S28e 56 115 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dod01g3008 116 Gene3D - 50 116 IPR012340 -
Dod01g3008 116 SUPERFAMILY Nucleic acid-binding proteins 53 116 IPR012340 -
Dod01g3008 116 CDD S1_S28E 57 116 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dod01g3008 116 ProSitePatterns Ribosomal protein S28e signature. 107 115 IPR028626 -
Dod01g3008 116 Hamap 30S ribosomal protein S28e [rps28e]. 52 116 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dod01g3008 116 PANTHER 40S RIBOSOMAL PROTEIN S28 52 116 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3008 Dod-Chr1 70789544 70793783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3008 52 116 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 2.75e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3008 K02979 - egr:104443388 106.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3008 01 70789544 70793783 Dod01g3008 01 70789544 70793783 ECH