Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2993 ATGTTCGGGTTCGGGTTTTGGCACCCTACGCTGCACTGCAAGCAGAGGGAGTGGCGGCAACAGTTGGAAACCCGGGAAAGGAATCCACTGATGCAGAGCTTCAGGATGAAAAACTTGTTGTCCCATGTCGCAAGAACCACAAAGAAGAAAAATAGAAAGAGACGCAAACTCAGAAACCATACCAGCCAAAAACACTGCATTTCCATTTCAAAAGAGTTGCCTTGTCCACAACAACATGAACAAGAAGATGAAGAAGAAGACACTGAGGAAGGTTTCAGCCTCAAAAGCTCTGCCCCATCACACACCCATGGAGTTCAACCTTTGGGGAACCTTTATCTCAACCCAGGTTCCATCAACTCCAGAGACACAGGCTTAGGTAACCTTCATACCCTTTCTGATGAGCTTGTTCTTGAGATTCTTGGGTTCTTGGATGGTGCTGAGTTGGGGGTTTTGGCCACTGTGAGCAAGTCCTTTTATGTCTTCTCAAACCATGAACCCCTTTGGAGGAATCTTGTCTTGGAGAATCTTCTTGGTGGGTTTCAGTTTCATGGTTCTTGGAAATCCACTTATGTAGCTGCTTGCTACCCTTCATTTGATTTCTCTAGCAATGCACTCCAGAGGTTCAAAGTTAGAGACTTTTATTCTGATTATCTCTTCCAGGGTTGGCTCTGTGCTAATCTTGAAATGAAGCATGAATGGTTGGAAAGGGATAATATAGTTAGGAAGAGAGGTATTTCGGTTGAAGAGTTTGTGTTGGAATTTGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGAAATTGGGATAGAGATTACTTGATGCAGTTGTGTGGTGATGTTAAGTTTGCAGTTGGGCCGGTAGAGATGAAGCTTGGAGACTATTTCGGGTACTCGGATCAAGTTAGAGAAGAAAGGCCGTTGTATTTGTTTGATCCAAAATTTGCGGAAAAAGTTCCAAAATTGGGTTCTGAATATGAGGTTCCAGTGTACTTCCGGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCTGACTATAGGTGGATTATTATTGGTCCTGCCGGATCCGGATCATCTTTCCATGTTGATCCAAATTCAACTTCAGCTTGGAATGCGGTGATCAAGGGGTCCAAGAAGTGGATATTGTTTCCTCCTGGTGTGATTCCACCTGGCGTTCATCCTAGTCCTGATGGCGCAGAGGTTGCATCTCCAGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACAAAGGATTGGAAAAAGAAACCTATTGAGTGCGTATGTAAAGCTGGGGAGGTTATCTTTGTGCCTAATGGATGGTGGCATTTGGTGTTCAACCTGGAGGAGTCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGATAAATGTGTTGGATTTTCTCAAAAGGCCAAATGCTAGCACACTAGTATCCGGAACAAGGGATCGAGTGAACCTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATTGATGAACTGACCCAAAGAGAAGCAGAGAAGAAGATCCAGCAGAAGAAACTTTCCTTCTGGGATTCTGTCACAGATGCCAATGCAGGAGCTTTCAAGTTCTCTTTCTAG 1650 0.4358 MFGFGFWHPTLHCKQREWRQQLETRERNPLMQSFRMKNLLSHVARTTKKKNRKRRKLRNHTSQKHCISISKELPCPQQHEQEDEEEDTEEGFSLKSSAPSHTHGVQPLGNLYLNPGSINSRDTGLGNLHTLSDELVLEILGFLDGAELGVLATVSKSFYVFSNHEPLWRNLVLENLLGGFQFHGSWKSTYVAACYPSFDFSSNALQRFKVRDFYSDYLFQGWLCANLEMKHEWLERDNIVRKRGISVEEFVLEFEEPNKPVLLEGCIDNWDALRNWDRDYLMQLCGDVKFAVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPKLGSEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPGVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKDWKKKPIECVCKAGEVIFVPNGWWHLVFNLEESIAITQNYVSRRNLINVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTQREAEKKIQQKKLSFWDSVTDANAGAFKFSF* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2993 549 Gene3D - 121 197 - -
Dod01g2993 549 Gene3D Cupin 205 469 - -
Dod01g2993 549 SMART fbox_2 131 171 IPR001810 GO:0005515
Dod01g2993 549 SUPERFAMILY Clavaminate synthase-like 239 482 - -
Dod01g2993 549 MobiDBLite consensus disorder prediction 46 62 - -
Dod01g2993 549 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 94 547 - -
Dod01g2993 549 MobiDBLite consensus disorder prediction 46 106 - -
Dod01g2993 549 ProSiteProfiles F-box domain profile. 125 171 IPR001810 GO:0005515
Dod01g2993 549 SUPERFAMILY F-box domain 123 194 IPR036047 GO:0005515
Dod01g2993 549 Pfam Cupin-like domain 249 467 IPR041667 -
Dod01g2993 549 ProSiteProfiles JmjC domain profile. 324 484 IPR003347 -
Dod01g2993 549 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 94 547 - -
Dod01g2993 549 SMART cupin_9 315 484 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2993 Dod-Chr1 70591933 70594876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2993 116 473 Glycosyltransferase AT1G78280 39.130 1.58e-78 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod01g2993 Cupin_8 3.4e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2993 - - lja:Lj1g3v4753250.1 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2993 01 70591933 70594876 Dod01g2993 01 70591933 70594876 ECH