Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2973 ATGCAAACTGTTTACCTTAAAGAGCATGAAGGGATTGGCCACAATTCTGTTGGACAGTTGTCATCTGCAACTTCAGCCCCCTGGTGGAGTGCCTTTGGAACTCAGTATGGGGAATCTGGTGGCCAAATTAAACCCTTTTCGCTGGAGCTTCCCTCCTATGTAGACCAAGCTGCCAATAAGCAATCCGCAAGAGGAGCTGAAAACGTGTTGGGTAAAGGAAATACAACTCAGTTTACCATCTTTCCAGATGATGGTAAAATGTCTGGTGATGAACAAAAGCCTCAAGCAGCCATATCTCTGCAGTCACCGCTTTCTGACACCAACACTCGATTTGAGCTAGGATTTAGCCAGCCGATGATCTGTGCAAAATATCCTTATCCGGGTCAAATTTATGAGCTCTTCTCACCTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCACTTAACATGACATCCGATGATGGACCAATTTACGTAAATGCTAAGCAGTATCATGGAATCATCAGACGTCGGCAGTCTCGCGCCAAAGCTGTACTTGATAACAAATTGACAAAACATCGCAAGCCGTATATGCATGAATCACGCCATCTCCATGCAATGCGCCGACCGAGAGGATGCGGTGGTCGCTTCTTGAACTCAAAGACTTCTGATAATGGAGATGGTAAAAGTGAAAGCAAAGTGGACAAAAAGCGATTGCAGTCCTGTGGCTCTCAGAATTCTGACCTTTTGCAATCTGAGGCTGGAACTTTGAATTCTTCAAAGGAGACAAATGGCTGCAGTCCAAACATTTCTGGGTCAGAGGTTACTAGCATGTATTCAAGGGGAGGTCTAGATAGCTTTGCTGTCAATCATCTTGGATCTGCTGTGCACTCTCTGGCAGACATGATCAATGGCGGGCGTGGTATGATCATGCCCCCCAAATGGGTTACAGCAGCAGGTAACTGCTGTAACCTTAAAGTTTGA 966 0.4555 MQTVYLKEHEGIGHNSVGQLSSATSAPWWSAFGTQYGESGGQIKPFSLELPSYVDQAANKQSARGAENVLGKGNTTQFTIFPDDGKMSGDEQKPQAAISLQSPLSDTNTRFELGFSQPMICAKYPYPGQIYELFSPYGPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDNKLTKHRKPYMHESRHLHAMRRPRGCGGRFLNSKTSDNGDGKSESKVDKKRLQSCGSQNSDLLQSEAGTLNSSKETNGCSPNISGSEVTSMYSRGGLDSFAVNHLGSAVHSLADMINGGRGMIMPPKWVTAAGNCCNLKV* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2973 321 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 320 IPR001289 GO:0003700|GO:0006355
Dod01g2973 321 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 157 211 IPR001289 GO:0003700|GO:0006355
Dod01g2973 321 Gene3D - 154 216 - -
Dod01g2973 321 PRINTS CCAAT-binding transcription factor subunit B signature 188 211 IPR001289 GO:0003700|GO:0006355
Dod01g2973 321 PRINTS CCAAT-binding transcription factor subunit B signature 157 179 IPR001289 GO:0003700|GO:0006355
Dod01g2973 321 ProSiteProfiles NF-YA/HAP2 family profile. 154 214 IPR001289 GO:0003700|GO:0006355
Dod01g2973 321 MobiDBLite consensus disorder prediction 193 243 - -
Dod01g2973 321 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 2 320 - -
Dod01g2973 321 SMART cbf3 153 214 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2973 Dod-Chr1 70345735 70350644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2973 20 321 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.544 5.15e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dod01g2973 CBFB_NFYA 4.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2973 K08064 - gmx:100527677 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2973 01 70345735 70350644 Dod07g0326 07 4021162 4025697 PCT