Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2972 ATGGCTGCTGCTACAGCTTCTATTTCCTGTTCTTCTTCTATCTGCAACAGAGTCTACAACCTCGCCTTCAGCCACACTTCCATTTCAGTCACCACCAACTTCCCTCAACGACCCATATCTCATAAACCCCTCAGCCTCAACCTCAAGTCACAAAGTTTGAACCTTTTTTCTCCCTCACTTCACCGTCTCCAACCCCCTTATGCTGCCTTTGATGGATTCGAAGTGGGTCAAGACAGCGACAGCACAGACACAGAGTCCCAACAGGAGGACCCCGAAACAGAACCAGGAACAACCTTTGGAAAACCAGAACAAGAGTTGTCAGAATCAAACGACTCTGGGAGGCTCTATGTGGGAAACTTGCCATATTCAATGACTTCTAACCAATTGGCTGAGCTCTTTGGAGAAGCTGGCACTGTGGTGTCTATTGAGATCGTGTATGATCGTGTGACGGATAGAAGCAGGGGATTTGCATTTGTTACAATGGGGAGTGTTGAGGAGGCTAAAGAAGCAATTCGAATGTTTGATGGTTCGCAAGTTGGGGGGAGGACTGCTAAGGTAAACTTCCCAGAAGTGCCCAAAGGAGGTGAAAGGTTAGTGATGGGGCCGAAAATACGAAACAACTACAGAGGTTTTGTAGACAGCCCTCATAAGATCTATGCTGGAAACCTTGGTTGGGGACTGACCTCACAGGGCCTCAGGGATGCTTTTGCTGCGCAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGGGACTCCGGAAGATCTCGGGGTTTTGGATTTGTCACTTTTCAAACTGCTGAGGATGTAGAGGTTGCTTTGAATGTTATGAATGGTGTGGAGGTTCAAGGTCGGCCCTTACGATTGAATTTGGCTGCAGAGAGGGCACCTTCAACTCCTCCAATGATTGAGGAAAATACAGGAAGTAATGTTGATACCTCGGAATTGTTATCTAGTGCCAGTACATGA 969 0.4747 MAAATASISCSSSICNRVYNLAFSHTSISVTTNFPQRPISHKPLSLNLKSQSLNLFSPSLHRLQPPYAAFDGFEVGQDSDSTDTESQQEDPETEPGTTFGKPEQELSESNDSGRLYVGNLPYSMTSNQLAELFGEAGTVVSIEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGPKIRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAAQPGLLSAKVIYERDSGRSRGFGFVTFQTAEDVEVALNVMNGVEVQGRPLRLNLAAERAPSTPPMIEENTGSNVDTSELLSSAST* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2972 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Dod01g2972 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 288 IPR000504 GO:0003723
Dod01g2972 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Dod01g2972 322 CDD RRM_HP0827_like 114 190 - -
Dod01g2972 322 PANTHER OS02G0815200 PROTEIN 2 304 - -
Dod01g2972 322 Gene3D - 71 196 IPR012677 -
Dod01g2972 322 Gene3D - 202 302 IPR012677 -
Dod01g2972 322 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 2 304 - -
Dod01g2972 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Dod01g2972 322 MobiDBLite consensus disorder prediction 302 322 - -
Dod01g2972 322 MobiDBLite consensus disorder prediction 71 112 - -
Dod01g2972 322 SUPERFAMILY RNA-binding domain, RBD 109 190 IPR035979 GO:0003676
Dod01g2972 322 SUPERFAMILY RNA-binding domain, RBD 213 298 IPR035979 GO:0003676
Dod01g2972 322 SMART rrm1_1 114 187 IPR000504 GO:0003723
Dod01g2972 322 SMART rrm1_1 217 290 IPR000504 GO:0003723
Dod01g2972 322 MobiDBLite consensus disorder prediction 296 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2972 Dod-Chr1 70343440 70345407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2972 106 295 Eukaryotic Initiation Factors Gene Family AT3G16380 32.474 1.29e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2972 - - aprc:113861916 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2972 01 70343440 70345407 Dod07g0942 07 14658528 14663415 PCT