Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2970 ATGAACGACTTGCTTTCCCCTCCCCGTGACAACGACAACAACCGCCACCACGTGATCCAGATGGCGGAATCGATGCCGTCGCCGGACAACAACCTGGAGAAGTTCTTCGAGGAGGTGGAATCATTGAAGGAGGAGCTGAAGGAGCTCGAGAACCTCCACAGTGAGAGTGAAACTTTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACCATCATGGACACGATCCAGGAGATCCAAGAGAGGCATGGGGCGGTCAAAGAGATAGAGAGGAACCTAAACGAGCTGCACCAAGTCTTCTTGGACATGTCAGTGTTGGTCCAAACACAGGGGGAGCAGCTGGATGACATAGAGAGCCACGTGGCACGAGCCAATTCTTTCGTGAGGGGTGGGGTCCAGCAGCTGCATGTTGCTAGGAAGCACCAGAAGAACACCCGCAAATGGACCTGTTTTGCCATCATACTGCTCCTCATAATCGTCTTGGTTATAGTTCTCCCCATAGTTTTAAAAAACTAA 516 0.5155 MNDLLSPPRDNDNNRHHVIQMAESMPSPDNNLEKFFEEVESLKEELKELENLHSESETFLQKAIQQQGRATIMDTIQEIQERHGAVKEIERNLNELHQVFLDMSVLVQTQGEQLDDIESHVARANSFVRGGVQQLHVARKHQKNTRKWTCFAIILLLIIVLVIVLPIVLKN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2970 171 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 54 166 - -
Dod01g2970 171 CDD SNARE_syntaxin1-like 75 135 - -
Dod01g2970 171 PANTHER SYNTAXIN 10 54 IPR045242 -
Dod01g2970 171 Coils Coil 32 62 - -
Dod01g2970 171 ProSitePatterns Syntaxin / epimorphin family signature. 82 121 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dod01g2970 171 Pfam SNARE domain 112 164 IPR000727 -
Dod01g2970 171 Pfam Syntaxin 52 111 IPR006011 GO:0016020
Dod01g2970 171 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 54 - -
Dod01g2970 171 SUPERFAMILY SNARE fusion complex 73 143 - -
Dod01g2970 171 SMART tSNARE_6 71 138 IPR000727 -
Dod01g2970 171 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 76 138 IPR000727 -
Dod01g2970 171 PANTHER SYNTAXIN 54 166 IPR045242 -
Dod01g2970 171 Gene3D - 70 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2970 Dod-Chr1 70334132 70336157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2970 49 168 SNARE and Associated Proteins AT1G61290 63.115 2.65e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2970 K08486 - gmx:100808718 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2970 01 70334132 70336157 Dod07g0323 07 4013687 4015179 PCT