Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2962 ATGGACGAGATCGATGTTCCTCCGTTCTTTCTCTGCCCCATCTCACTTGAAATCATGAAGGATCCCGTCACTGTCTCCACCGGCATCACCTACGACCGAGAGAGTATTGAGAGGTGGCTGTTTTCCGAGAAGAACAAGACATGCCCTGTCACCAAACAGCCACTTTCATCTTCAGATTGCGCTGCAGATCTCACACCTAACCACACCCTCCGGAGACTGATTCAGGCATGGTGTACCATGAACGCTTCTTATGGCATCGAAAGGATTCCCACTCCTAAGCCTCCAGTGAACAAAACCCAGATCTCAAAGCTCATCAAAGACGCCTCTCGTTCCCCCACGATGCAGATCAAATGTCTCCGAAGCCTCAAATCCATTGCTTCTGGAAGCGAGACCAATAAACGGTGCATGGAAGCAGCTGGTGCTGTAGAATTCTTAGCATCGGTTGTGATGAACAACATCGATTCTTCATCTTTACCACCCGAATCAGATGCTAACTCGGGGGAAGAAGATGAGTTTCAGTTGAAAACAAGTCCAAGAGACGAAGCCTTGAACATGCTCCACAATCTTCATATATCTGAAGCTGGATTGAAGACCCTATTGGTATTCAAGAACGGAGAGTTCATTGAATCCTTAACAAGGGTCATGCAGAAGGGAATCTTTGAGTCACGAGCTTACGCAGTTTTCTTGTTGAAATCCATGTCCGAAGTGGCCGATCCACTGCACCTACTCCATCTAAGAACCGAGTTGTTTGTCCAACTAGTGCAAGTCTTGAAGGACCAGATTTCTCAGAAGGCATCAAAAGCAACACTCTATACACTGATCCAAGTTTGCCCTTGGGGGAGGAACAGGATCAAAGCCGTTGAAGCAGGTGCTGTCTCGGTTTTGATAGAGCTTCTTCTCGACAGCAAGGAAAGGAAGCCATGTGAGATGATGCTGGTGCTGTTGGATTTGTTGTGCCAATGTGCAGAGGGAAGAGCACAGCTCTTGAGCCATGGAGCAGGGCTAGCCATGGTGTCAAAGAAGATTCTGAGGGTTTCAACCATGGCAAACGATAGGGCTGTGAGGATTCTTCTGTCCATTTCGAAGTTCTCAGCGACCCCGGGTGTTCTTCAGGAGATGCTGAAACTTGGGGTAGTGGCGAAACTGTGCTTGATGCTGCAAGTGGATAGTGGAAGCAAGGCCAAGGAGAAGGCAAGAGAGATTCTGAAGCTGCATGCTCGGGCATGGAAGGATTCTCCATGCATCCCCACCAATTTGCTTTCTGCATACCCGGTTTATGTGTGA 1284 0.4836 MDEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIERWLFSEKNKTCPVTKQPLSSSDCAADLTPNHTLRRLIQAWCTMNASYGIERIPTPKPPVNKTQISKLIKDASRSPTMQIKCLRSLKSIASGSETNKRCMEAAGAVEFLASVVMNNIDSSSLPPESDANSGEEDEFQLKTSPRDEALNMLHNLHISEAGLKTLLVFKNGEFIESLTRVMQKGIFESRAYAVFLLKSMSEVADPLHLLHLRTELFVQLVQVLKDQISQKASKATLYTLIQVCPWGRNRIKAVEAGAVSVLIELLLDSKERKPCEMMLVLLDLLCQCAEGRAQLLSHGAGLAMVSKKILRVSTMANDRAVRILLSISKFSATPGVLQEMLKLGVVAKLCLMLQVDSGSKAKEKAREILKLHARAWKDSPCIPTNLLSAYPVYV* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2962 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 424 - -
Dod01g2962 427 SUPERFAMILY RING/U-box 3 84 - -
Dod01g2962 427 ProSiteProfiles U-box domain profile. 5 84 IPR003613 GO:0004842|GO:0016567
Dod01g2962 427 PANTHER WDSAM1 PROTEIN 1 424 IPR045185 GO:0061630
Dod01g2962 427 Gene3D - 95 413 IPR011989 -
Dod01g2962 427 SMART Ubox_2 9 77 IPR003613 GO:0004842|GO:0016567
Dod01g2962 427 Pfam U-box domain 6 81 IPR003613 GO:0004842|GO:0016567
Dod01g2962 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Dod01g2962 427 CDD RING-Ubox_PUB 10 53 IPR045210 -
Dod01g2962 427 SUPERFAMILY ARM repeat 103 403 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2962 Dod-Chr1 70239272 70240837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2962 2 424 U-box Gene Family AT2G35930 58.548 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2962 - - adu:107471540 674.855