Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2960 ATGCACCACGACGTCTCCGCCCTGCATGGCTTCCTCCCCCGCGTCCAGTACAACCCTTGGAGCACAATTGACCCCAGCTCGGCGGCGCGTGAGACACCACGCGCCCAGCAGGGTTTGTCTCTGAGCCTGTCGTCCCAACAAGCTGGGTTCGGATCTTTCCGCGTCGATCGTGACGCTCCGCCGCAGGGTCAGGCTCCGGCTATGTCCGGCGATGACCTGCGCGGGTCTGGGGGTTCTCCTTCGTCGGCTTCTGGGGTCACCAATGGGGGTTCGGGCATTCAGAGCGTGCTTTTGAGCTCAAAGTATCTGAAGGCAGCGCATGAGCTTCTAGAGGAGGTGGTGAATGTTAACAACAATGGTGTTAATGCTGAATTGGCAAAGAAGAGCGTTGGACAGAGCAACAAGGTGGTTGGGGAGTCGTCCGCGGCGGCGAGTGGTGATGGCTCGGTTGGTGGTGAGGGGAGCGGGAAGCGTAGCTCTGAGCTTTCAACTGCGGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTACTCAGCATGCTTGAGGAGGTGGAGCAAAGGTACAGACAGTACCACCACCAGATGGAGATTGTGGTGGCCTCATTCGAACAAGTAGCAGGGATTGGCTCCGCGAGAACTTACACTGCCCTTGCACTGCAAACCATCTCCAAGCAGTTTCGGTGCTTGAAAGATGCCATAACGGGCCGGATTAAAGCTGCGAACAGGAGCTTAGGAGAGGAAGATGGCTTTGGAGGTAAGATTGAAGGGTCAAGGCTCAAATATGTTGACCATCACCTGCGGCAACAGCGAGCTCTGCAACAGTTGGGAATGATCCAGCAGAATGCTTGGAGACCCCAGAGAGGTTTGCCAGAAAGATCTGTTTCTGTCCTTCGTGCTTGGCTCTTTGAACACTTCCTCCATCCTTATCCCAAGGATTCTGATAAGCACATGCTTGCAAAACAAACAGGGCTTTCTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTCTGGAAGCCAATGGTGGAAGAAATGTACTTGGAGGAGATGAAAGAGCATGAACGGAATGGATCTGAGGACAAATCAAGCAAGAGCAATGAAGATCCATCTACCAAAATGGCAGCCCCACAAGAGAAAGGTCCTGCATCTGAAACAGAAGCGAAGAGTTTCAGTTCCAAACGAGACGTGTCTAAGAGCCAGAACACCCCAATGGTTTCAACATCATCAGTTGGGGGAAACGTGAGAAACCGGGCAGGGTTCAGCTTCATGGGGTCATCAGAGCTAGAAGGGATAACACAAGGAAGTCCCAAGAAACCAAGGAACAATGAAATCATGCATTCCCCAAATAGTGTTCCTTCAATCAACATGGATGTCAAGCCCCATGAGGCAAACAGTGAGCAGCTTTTGATGAAGTTTGGGGATGAAAGGCAGAGTAGAGATGGATACTCTTTCATGGGAAGCCAAACAAACTTCGTTGGTGGTTTTGGACAGTATCCAATTGGTGATATTGGTAGGTTTGATGCAGAGCAGTTCACACCGCGGTTTTCAGGTAATGGTGTATCACTCACTCTTGGTCTTGACTCATTACCAGGAACACATCAAACATTTCTCCCAAACCAAAACATTCAACTAGGAAGAAGCCTTGACATCAGTGAACCAAACGAGTTTGGTGCAATAAACACCTCCTCTCCTCACTCCACTGCTGCATTTGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCCTGA 1785 0.5042 MHHDVSALHGFLPRVQYNPWSTIDPSSAARETPRAQQGLSLSLSSQQAGFGSFRVDRDAPPQGQAPAMSGDDLRGSGGSPSSASGVTNGGSGIQSVLLSSKYLKAAHELLEEVVNVNNNGVNAELAKKSVGQSNKVVGESSAAASGDGSVGGEGSGKRSSELSTAERQEIQMKKAKLLSMLEEVEQRYRQYHHQMEIVVASFEQVAGIGSARTYTALALQTISKQFRCLKDAITGRIKAANRSLGEEDGFGGKIEGSRLKYVDHHLRQQRALQQLGMIQQNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEMKEHERNGSEDKSSKSNEDPSTKMAAPQEKGPASETEAKSFSSKRDVSKSQNTPMVSTSSVGGNVRNRAGFSFMGSSELEGITQGSPKKPRNNEIMHSPNSVPSINMDVKPHEANSEQLLMKFGDERQSRDGYSFMGSQTNFVGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDISEPNEFGAINTSSPHSTAAFESISMQNPKRFAAQLLPDFVA* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2960 594 SMART HOX_1 283 347 IPR001356 GO:0003677
Dod01g2960 594 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 536 - -
Dod01g2960 594 MobiDBLite consensus disorder prediction 137 166 - -
Dod01g2960 594 MobiDBLite consensus disorder prediction 397 418 - -
Dod01g2960 594 MobiDBLite consensus disorder prediction 354 370 - -
Dod01g2960 594 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 3 536 - -
Dod01g2960 594 MobiDBLite consensus disorder prediction 429 457 - -
Dod01g2960 594 MobiDBLite consensus disorder prediction 52 88 - -
Dod01g2960 594 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Dod01g2960 594 Gene3D - 286 365 - -
Dod01g2960 594 Coils Coil 167 194 - -
Dod01g2960 594 CDD homeodomain 283 344 IPR001356 GO:0003677
Dod01g2960 594 MobiDBLite consensus disorder prediction 354 458 - -
Dod01g2960 594 Pfam Associated with HOX 96 234 IPR006563 -
Dod01g2960 594 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Dod01g2960 594 SUPERFAMILY Homeodomain-like 284 350 IPR009057 -
Dod01g2960 594 SMART prehox3 91 235 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2960 Dod-Chr1 70214626 70217801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2960 4 594 Homeobox Transcription Factor Family AT2G35940 51.772 9.15e-168 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dod01g2960 POX 2.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2960 - - gmx:100810901 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2960 01 70214626 70217801 Dod07g0311 07 3824649 3830755 PCT