Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2948 ATGGAGGAGCGCAGCGTTGCGGCGAGGGCGAAGCCTTACAAGAAGCCAGACCCAGATGCCCCGAAGATCACGCGGCCATGCACCGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCTCTCTTCGGCCACATGCGATGCCACCCGGAGCGCCAGTGGAGAGGGATCAATCCTCCCCCCAACCTCCTCAGACGACCACCTACGGAACAACAACAACAACAACAAGATCACATGACCGACAAGGACCACGAGGTTGCCGAGTGTTTGCTGTTGCTGGCAAGTGGCAAGGAGAAGGAGAGTGTATTTAACGTGGAGGGCCTCGAGCACTGTCCCAGTCGTCATCGTCATGAGCAACAGTTGGAGAGCCCCATGAACATCCAGAGTGGTGCGGGTGCAGCCACTGCCACAATAATCGGGGACAACGGCGGAGGAGGAGGGCACAAGTGTAGCATATGCATGAGGGTCTTCTCAACCGGCCAAGCTCTTGGTGGCCACAAGAGGTGTCACTGGGAGAAAGCAGCCGACACCGACCCCTCCATGGCTGCACCCGCCGATGGATCATGCGTGCCTGTTGACTTGAATTTGCCTGCTACTCTTGAAGACCATTGCTCTTCTTCATCACCACCTCTCTCTTTGGATTTGAGGTTGGGACTATAA 654 0.5657 MEERSVAARAKPYKKPDPDAPKITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLLRRPPTEQQQQQQDHMTDKDHEVAECLLLLASGKEKESVFNVEGLEHCPSRHRHEQQLESPMNIQSGAGAATATIIGDNGGGGGHKCSICMRVFSTGQALGGHKRCHWEKAADTDPSMAAPADGSCVPVDLNLPATLEDHCSSSSPPLSLDLRLGL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2948 217 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Dod01g2948 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Dod01g2948 217 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 8 217 - -
Dod01g2948 217 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 8 217 - -
Dod01g2948 217 MobiDBLite consensus disorder prediction 1 25 - -
Dod01g2948 217 SUPERFAMILY beta-beta-alpha zinc fingers 26 168 IPR036236 -
Dod01g2948 217 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Dod01g2948 217 SMART c2h2final6 25 47 IPR013087 -
Dod01g2948 217 SMART c2h2final6 146 168 IPR013087 -
Dod01g2948 217 MobiDBLite consensus disorder prediction 1 22 - -
Dod01g2948 217 Pfam C2H2-type zinc finger 146 170 - -
Dod01g2948 217 Pfam C2H2-type zinc finger 26 49 - -
Dod01g2948 217 MobiDBLite consensus disorder prediction 51 79 - -
Dod01g2948 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2948 Dod-Chr1 70041774 70042427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2948 14 217 C2H2 Transcription Factor Family AT4G35280 46.121 2.06e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2948 zf-C2H2_6 6.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2948 - - ath:AT4G35280 166.777