Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2930 ATGTCCGCCGCCGCCGGAGCTCCGAACCGCCGGGAATCGCCGCCGAGGGAAGCTTCCGGCATTCCGAACCGGCCGCCGCTGAAGCGCCACCTTGTGTTTGCCTCGACGAAGCCGCCGTTTGCTCCGCCGGACCACTACCGCAGCTTCTCCGCTTCCCTCTCTCGGAGAGCCTCCGATCAAGAAGCCGAAGCTGTCGTTGTTCGATCTCCATACATGAAGAGGAAGAGTGGAGGACAGAATGACAGTGTAGGAGAGACACTGGAGCAGGGTAACAGCTCGGGATACGCTAACGTATTTAATAGTCCCCTCAAAACCCCTGTGTCTACAAAAGGAGGAAGGACATATAATAAGTCAAAGGTTTCCAAGGAAGGTAGATCCATTCCGCAGACACCTATCTCAGATGCTGGATCCCCATCTCTTACTCCAGCTAGCAACTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAATTCGTCAATTTACTCAAGCATGGAGAGGGTGGCAATCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGAAGGATATATGACATAACTAATGTTCTGGAAGGAATTGGTCTCATAGAGAAGAAGATCAAGAACAGAATACATTGGAAGGGGATTGATTGTTCGACATCAGGTGCGGTAGATGATGATGTCTCAATGCTGAAGGTGGAAGTTGAGAAACTTTCCTTGGAGGAGTGCAGATTAGATGATCAAATAAGGGAAATGCAAGAACATCTTAGGATTTTGAGTGAAGATGAAAACAATAAGAAGTTGCTTTTTGTAACCGAAGATGATATTAAGGCCCTACCAGACTTCCAGAATGAAACTCTGATAGCAATTAAGGCTCCACACGGAACCACCCTGGAAGTCCCTGAACCTGAGGAAGCTGTTGACTACCCACAGAGGAGATATCGGGTCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTATCTTATCAGTCAATTTGAAGAGAAATTCGAAGATATGAACTTTCCACTTGCTTCTAGTTCAGGGTCCAATGAACATCAAGCAACAGAAATGTTTCCTGTTGAATGCAGTCATAAAGGCCTTGAACCTCAAGCTGAACTCTCTTCCTATACCTGCTCTGATCTAAACACTGTACAAGAGTCTGCTGGGGGCATGATGAAAATTGTTCCTTCAGCTGCTGATACTGATGATTACTGGCTTCTATCAGATGCTGAAGTTAGCATAACAGACATGTGGAAAACAGATTCTAGTGTGGATTGGAACGGGGTGGACATGCTTCATCCTGACTTTGGAATCATCTCGAGGCCACAAACTCCATCATCTGGGTTTGCTGAAGCACCATCAACAGTCAATACTCCTAACAGGTGA 1380 0.463 MSAAAGAPNRRESPPREASGIPNRPPLKRHLVFASTKPPFAPPDHYRSFSASLSRRASDQEAEAVVVRSPYMKRKSGGQNDSVGETLEQGNSSGYANVFNSPLKTPVSTKGGRTYNKSKVSKEGRSIPQTPISDAGSPSLTPASNCRYDSSLGLLTKKFVNLLKHGEGGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKIKNRIHWKGIDCSTSGAVDDDVSMLKVEVEKLSLEECRLDDQIREMQEHLRILSEDENNKKLLFVTEDDIKALPDFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRVILRSTMGPIDVYLISQFEEKFEDMNFPLASSSGSNEHQATEMFPVECSHKGLEPQAELSSYTCSDLNTVQESAGGMMKIVPSAADTDDYWLLSDAEVSITDMWKTDSSVDWNGVDMLHPDFGIISRPQTPSSGFAEAPSTVNTPNR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2930 459 Coils Coil 242 262 - -
Dod01g2930 459 MobiDBLite consensus disorder prediction 438 459 - -
Dod01g2930 459 SUPERFAMILY E2F-DP heterodimerization region 224 329 IPR037241 -
Dod01g2930 459 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Dod01g2930 459 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Dod01g2930 459 PANTHER TRANSCRIPTION FACTOR E2F 25 442 IPR015633 GO:0000978|GO:0006357
Dod01g2930 459 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Dod01g2930 459 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Dod01g2930 459 MobiDBLite consensus disorder prediction 1 141 - -
Dod01g2930 459 MobiDBLite consensus disorder prediction 75 141 - -
Dod01g2930 459 Gene3D - 141 214 IPR036388 -
Dod01g2930 459 CDD E2F_DD 223 329 IPR032198 GO:0046983
Dod01g2930 459 Gene3D - 219 329 - -
Dod01g2930 459 PANTHER TRANSCRIPTION FACTOR E2FB 25 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2930 Dod-Chr1 69754890 69760026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2930 22 459 E2F-DP Transcription Factor Family AT2G36010 56.356 1.19e-157 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dod01g2930 E2F_CC-MB 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2930 K06620 - gmx:100811762 653.284