Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2911 ATGTCCACAAATCACTACTCATCACCAGAAACAGCACAGTGGTGGCCTCAGCAACACCAACAACAGCAAGAACCAGACACCACAATGGAACCACTCCGAGTCCAACCCATTTCAGCCATCCCCATTCGGACATGGCACCCCGACCAACCACAACCACAACCCACATGGTTCAATGTCGGAGGAGGAGGAGACCAACTCCAACCACAACCACAACAGCAATCGCTCTTCCATGACAACAACCAACAAGAACAAGTTGGAGATGACATGAAGGAGCACATGTTCGAGAAAATTCTAACACCAAGCGACGTCGGGAGGCTGAACCGGCTGGTGATCCCGAAGAATCACGCTGAGGAGCACTTGCCAGCTGGGGCAGGGGGTTACTCCTCCGAACATGGGAAAGGCTTGCTCCTGAATTTCGAGGACGAGTCCGGGAAATGCTGGAGGTTCCGTTACTCGTATTGGAGCAGCAGCCAGAGCTATGTCCTGACAAAGGGGTGGACCCGTTTCGTCAAGGAGAAACACCTTGAAGCTGGTGACATCGTTGTCTTCCAGAGGCACCGCATGGACCACAACCATTTCTTTGTTAGCTGGAGGCCCCGCCTCCCTGGGGCCCCGGCACCGGGAAGACCAAGGAGGAGGAGATTGGAAGAAGCTGGAACTGCAAGTGGAAGTGGTGATCATAGTCATGGGAATAATAATAATAATAGCAGTGGCTATAGCCATGGCAATAGTGAGAATGCGGGTGTGGGTGTGGGGTTGAGGAGGAGAGAATACTATCCTGCGCTTCTTCCTTATCCTACGCAGCACCAACATTTGTCATACAGTCCTGATTTTCTTCCTCATGCAGGTGGAGGGTCCCAAGGTCCGAACGAAACCACATCGGTGGTGAAGCTGTTCGGGGTGAACTTGCGGCAATGA 918 0.5272 MSTNHYSSPETAQWWPQQHQQQQEPDTTMEPLRVQPISAIPIRTWHPDQPQPQPTWFNVGGGGDQLQPQPQQQSLFHDNNQQEQVGDDMKEHMFEKILTPSDVGRLNRLVIPKNHAEEHLPAGAGGYSSEHGKGLLLNFEDESGKCWRFRYSYWSSSQSYVLTKGWTRFVKEKHLEAGDIVVFQRHRMDHNHFFVSWRPRLPGAPAPGRPRRRRLEEAGTASGSGDHSHGNNNNNSSGYSHGNSENAGVGVGLRRREYYPALLPYPTQHQHLSYSPDFLPHAGGGSQGPNETTSVVKLFGVNLRQ* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2911 305 ProSiteProfiles B3 DNA-binding domain profile. 94 201 IPR003340 GO:0003677
Dod01g2911 305 MobiDBLite consensus disorder prediction 199 247 - -
Dod01g2911 305 CDD B3_DNA 92 196 IPR003340 GO:0003677
Dod01g2911 305 SMART B3_2 94 201 IPR003340 GO:0003677
Dod01g2911 305 MobiDBLite consensus disorder prediction 224 244 - -
Dod01g2911 305 Gene3D - 88 202 IPR015300 -
Dod01g2911 305 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 29 304 - -
Dod01g2911 305 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 304 IPR044800 GO:0003700
Dod01g2911 305 SUPERFAMILY DNA-binding pseudobarrel domain 91 200 IPR015300 -
Dod01g2911 305 MobiDBLite consensus disorder prediction 1 29 - -
Dod01g2911 305 Pfam B3 DNA binding domain 94 199 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2911 Dod-Chr1 69533049 69535276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2911 79 200 RAV Transcription Factor Family AT3G11580 59.690 1.80e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod01g2911 B3 2.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2911 - - aprc:113872948 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2911 01 69533049 69535276 Dod01g2911 01 69533049 69535276 ECH
Dod01g2911 01 69533049 69535276 Dod07g0272 07 3399662 3402665 PCT