Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2908 ATGCTGATACCTCCCGTTGTTGGTATCGTCTCGTCTGCGAAACTCCAAATCTCTTCCATGGCGGCTATCAGAAGAATCATTGGCTCAAACAAAACCTTGCCCTTGTCCCCGCCTCCTTCTCTTCTCACTTTCCGCCGGGCTATCGCTTTCAAGCTCTTCGTTGGAGGATTGTCCGTGTACACCACAGAGAAAGGATTGTCAGATGCTTTCTCTAATTGTGGACAAGTTATTGAAGCTAAAATTATAACAGACAGGGTGTCAGAGAGATCTAAAGGGTTTGGGTTTGTCACCTTTGCTTCACATGATGATGCTGAGAATGCCATTTCAGAGATGAATGGGAAGGCACTAAATGGTCGTGTTATCTTCGTTGATTATGCAAAACCCTCTTCCAGGACTGGTGCAATGCCAATTGCAAGAGGACCACCTGAACCAACAGTTGACAGTTGA 447 0.4586 MLIPPVVGIVSSAKLQISSMAAIRRIIGSNKTLPLSPPPSLLTFRRAIAFKLFVGGLSVYTTEKGLSDAFSNCGQVIEAKIITDRVSERSKGFGFVTFASHDDAENAISEMNGKALNGRVIFVDYAKPSSRTGAMPIARGPPEPTVDS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2908 148 PANTHER TRANSFORMER-2-RELATED 20 147 - -
Dod01g2908 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Dod01g2908 148 SMART rrm1_1 51 124 IPR000504 GO:0003723
Dod01g2908 148 Gene3D - 45 143 IPR012677 -
Dod01g2908 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Dod01g2908 148 SUPERFAMILY RNA-binding domain, RBD 50 133 IPR035979 GO:0003676
Dod01g2908 148 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 20 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2908 Dod-Chr1 69500164 69501898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2908 52 131 Eukaryotic Initiation Factors Gene Family AT2G23350 31.250 1.88e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2908 - - pvu:PHAVU_001G192800g 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2908 01 69500164 69501898 Dod01g2908 01 69500164 69501898 ECH