Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod01g2885 | ATGCATAAAATGCGTGGGACAAGACAGAGGGATGAAACAGGCCAAAATCCAGAATCACCAGAGGTGGGGACCAGTGAGCTTGACAAACCTACAGATTCTGATGAGCAGGTAGATCTTGAAGGGGACAATGATCAAGAGGAGACCATGGAGGAAGTTGAATATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGACTAAGCCCTCAGATGGTGAAGAGGAGACAAGAGTGGCGGATACTGTGGATGAGGATGAGAAAAAGAAACGTGCTGAGCTTCTTGCGCTTCCACCTCATGGGTCAGAGGTCTACATTGGTGGCATTCCTCACAAAGTTTCTGAAGAAGATTTGAGGACCTTTTGTCAATCTGTGGGAGAAGTGACAGAGGTTAGGATTATGAAAGGAAAAGAATCAGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGTCAAAGGAGTTGGCATCTAAGGCTATTGATAAGCTGAACAACTCTGAATTTAAGGGGAAGAAAATAAAGTGCTCAACATCTCAAGCTAAGCATAAGCTGTTCATTGGTAATGTTCCTAGAAATTGGACTGTAGAAGATATGAGGAAGGTTGTTTCAGATGTTGGTCCTGGAGCCGGTTCTGTGGAACTGTTGAAGGATCCTCAGAATTCTGGCCGTAATCGCGGGTTTGCTTTTATTGAGTATTACAATAATGCATGTGCAGAATATTCAAGGCAGAAGATGTCAGACTCAAAATTTAAACTTGGTAACAATGCTCCAACAGTGAGTTGGGCCGACCCAAGAAATGCTGAATCGTCTGCAGCCTCCCAGGTAAAAGCAGTTTATGTAAAGAACCTTCCGGAAAATATTACTCAGGATCGTCTTAAGGAGCTATTTCAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCTGCAAAAGCAGGACAAGAGAAGAGCAGATTTGGGTTTGTGCACTTTGCGGAAAGGTCAAGTGCCATGAAAGCTTTGAAGAATACAGAGAAGTATGAAATTGATGGTCAAGCTTTGGACTGTTCACTTGCAAAGCCTCAAGCAGATCAGAAGTCATCGGGGACTCCAAATTCGCAGAAGTCTGTTGTATTTCCCACTTATCCACCTCATCTTGGCTATGGTATGGTTGGAAGTGGCTATGGTGCTATTGGTGCAGCATATGGTGCAGCTGGCTTTGCGCAACCACTGATGTATGGTGCAGGAGCAGCCCCTGCTGGCATGTCAATGATGCCAATGCTTTTACCAGATGGAAGGATTGGATATGTGTTGCAACAACCAGGGTTGCAGCAGCATACTCCTCCTCCACCACCCATATCCCGACATGGTAAGAGTGGTGGTGGTAGCTCAAGTGGTGGGAAACGGGGTAATGATAACAGCCGTTATCGTGGGCGTGGCCGATATCATCCCTACTAA | 1482 | 0.4548 | MHKMRGTRQRDETGQNPESPEVGTSELDKPTDSDEQVDLEGDNDQEETMEEVEYEEVEEEEEVEEEEEEEEEEEEEEEEEEETKPSDGEEETRVADTVDEDEKKKRAELLALPPHGSEVYIGGIPHKVSEEDLRTFCQSVGEVTEVRIMKGKESGEAKGYAFVTFKSKELASKAIDKLNNSEFKGKKIKCSTSQAKHKLFIGNVPRNWTVEDMRKVVSDVGPGAGSVELLKDPQNSGRNRGFAFIEYYNNACAEYSRQKMSDSKFKLGNNAPTVSWADPRNAESSAASQVKAVYVKNLPENITQDRLKELFQHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQALDCSLAKPQADQKSSGTPNSQKSVVFPTYPPHLGYGMVGSGYGAIGAAYGAAGFAQPLMYGAGAAPAGMSMMPMLLPDGRIGYVLQQPGLQQHTPPPPPISRHGKSGGGSSSGGKRGNDNSRYRGRGRYHPY* | 494 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod01g2885 | 493 | Gene3D | - | 198 | 278 | IPR012677 | - | |
Dod01g2885 | 493 | SUPERFAMILY | RNA-binding domain, RBD | 287 | 377 | IPR035979 | GO:0003676 | |
Dod01g2885 | 493 | SMART | rrm1_1 | 118 | 191 | IPR000504 | GO:0003723 | |
Dod01g2885 | 493 | SMART | rrm1_1 | 292 | 365 | IPR000504 | GO:0003723 | |
Dod01g2885 | 493 | SMART | rrm1_1 | 198 | 275 | IPR000504 | GO:0003723 | |
Dod01g2885 | 493 | Gene3D | - | 41 | 197 | IPR012677 | - | |
Dod01g2885 | 493 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Dod01g2885 | 493 | SUPERFAMILY | RNA-binding domain, RBD | 114 | 282 | IPR035979 | GO:0003676 | |
Dod01g2885 | 493 | Coils | Coil | 49 | 84 | - | - | |
Dod01g2885 | 493 | SMART | rrm2_1 | 118 | 191 | IPR003954 | GO:0003676 | |
Dod01g2885 | 493 | MobiDBLite | consensus disorder prediction | 87 | 103 | - | - | |
Dod01g2885 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 293 | 362 | IPR000504 | GO:0003723 | |
Dod01g2885 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 199 | 265 | IPR000504 | GO:0003723 | |
Dod01g2885 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 189 | IPR000504 | GO:0003723 | |
Dod01g2885 | 493 | Gene3D | - | 280 | 403 | IPR012677 | - | |
Dod01g2885 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 195 | IPR000504 | GO:0003723 | |
Dod01g2885 | 493 | PANTHER | - | 20 | 491 | - | - | |
Dod01g2885 | 493 | MobiDBLite | consensus disorder prediction | 37 | 86 | - | - | |
Dod01g2885 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 291 | 369 | IPR000504 | GO:0003723 | |
Dod01g2885 | 493 | PANTHER | GEO13361P1-RELATED | 20 | 491 | - | - | |
Dod01g2885 | 493 | MobiDBLite | consensus disorder prediction | 449 | 493 | - | - | |
Dod01g2885 | 493 | CDD | RRM_SF | 119 | 191 | - | - | |
Dod01g2885 | 493 | MobiDBLite | consensus disorder prediction | 1 | 103 | - | - | |
Dod01g2885 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 197 | 279 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod01g2885 | Dod-Chr1 | 69314919 | 69320551 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod01g2885 | 119 | 459 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.211 | 5.51e-14 | 72.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod01g2885 | K13161 | - | gmx:100798476 | 634.409 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dod01g2885 | 01 | 69314919 | 69320551 | Dod01g2885 | 01 | 69314919 | 69320551 | ECH |