Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2885 ATGCATAAAATGCGTGGGACAAGACAGAGGGATGAAACAGGCCAAAATCCAGAATCACCAGAGGTGGGGACCAGTGAGCTTGACAAACCTACAGATTCTGATGAGCAGGTAGATCTTGAAGGGGACAATGATCAAGAGGAGACCATGGAGGAAGTTGAATATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGACTAAGCCCTCAGATGGTGAAGAGGAGACAAGAGTGGCGGATACTGTGGATGAGGATGAGAAAAAGAAACGTGCTGAGCTTCTTGCGCTTCCACCTCATGGGTCAGAGGTCTACATTGGTGGCATTCCTCACAAAGTTTCTGAAGAAGATTTGAGGACCTTTTGTCAATCTGTGGGAGAAGTGACAGAGGTTAGGATTATGAAAGGAAAAGAATCAGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGTCAAAGGAGTTGGCATCTAAGGCTATTGATAAGCTGAACAACTCTGAATTTAAGGGGAAGAAAATAAAGTGCTCAACATCTCAAGCTAAGCATAAGCTGTTCATTGGTAATGTTCCTAGAAATTGGACTGTAGAAGATATGAGGAAGGTTGTTTCAGATGTTGGTCCTGGAGCCGGTTCTGTGGAACTGTTGAAGGATCCTCAGAATTCTGGCCGTAATCGCGGGTTTGCTTTTATTGAGTATTACAATAATGCATGTGCAGAATATTCAAGGCAGAAGATGTCAGACTCAAAATTTAAACTTGGTAACAATGCTCCAACAGTGAGTTGGGCCGACCCAAGAAATGCTGAATCGTCTGCAGCCTCCCAGGTAAAAGCAGTTTATGTAAAGAACCTTCCGGAAAATATTACTCAGGATCGTCTTAAGGAGCTATTTCAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCTGCAAAAGCAGGACAAGAGAAGAGCAGATTTGGGTTTGTGCACTTTGCGGAAAGGTCAAGTGCCATGAAAGCTTTGAAGAATACAGAGAAGTATGAAATTGATGGTCAAGCTTTGGACTGTTCACTTGCAAAGCCTCAAGCAGATCAGAAGTCATCGGGGACTCCAAATTCGCAGAAGTCTGTTGTATTTCCCACTTATCCACCTCATCTTGGCTATGGTATGGTTGGAAGTGGCTATGGTGCTATTGGTGCAGCATATGGTGCAGCTGGCTTTGCGCAACCACTGATGTATGGTGCAGGAGCAGCCCCTGCTGGCATGTCAATGATGCCAATGCTTTTACCAGATGGAAGGATTGGATATGTGTTGCAACAACCAGGGTTGCAGCAGCATACTCCTCCTCCACCACCCATATCCCGACATGGTAAGAGTGGTGGTGGTAGCTCAAGTGGTGGGAAACGGGGTAATGATAACAGCCGTTATCGTGGGCGTGGCCGATATCATCCCTACTAA 1482 0.4548 MHKMRGTRQRDETGQNPESPEVGTSELDKPTDSDEQVDLEGDNDQEETMEEVEYEEVEEEEEVEEEEEEEEEEEEEEEEEEETKPSDGEEETRVADTVDEDEKKKRAELLALPPHGSEVYIGGIPHKVSEEDLRTFCQSVGEVTEVRIMKGKESGEAKGYAFVTFKSKELASKAIDKLNNSEFKGKKIKCSTSQAKHKLFIGNVPRNWTVEDMRKVVSDVGPGAGSVELLKDPQNSGRNRGFAFIEYYNNACAEYSRQKMSDSKFKLGNNAPTVSWADPRNAESSAASQVKAVYVKNLPENITQDRLKELFQHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQALDCSLAKPQADQKSSGTPNSQKSVVFPTYPPHLGYGMVGSGYGAIGAAYGAAGFAQPLMYGAGAAPAGMSMMPMLLPDGRIGYVLQQPGLQQHTPPPPPISRHGKSGGGSSSGGKRGNDNSRYRGRGRYHPY* 494
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2885 493 Gene3D - 198 278 IPR012677 -
Dod01g2885 493 SUPERFAMILY RNA-binding domain, RBD 287 377 IPR035979 GO:0003676
Dod01g2885 493 SMART rrm1_1 118 191 IPR000504 GO:0003723
Dod01g2885 493 SMART rrm1_1 292 365 IPR000504 GO:0003723
Dod01g2885 493 SMART rrm1_1 198 275 IPR000504 GO:0003723
Dod01g2885 493 Gene3D - 41 197 IPR012677 -
Dod01g2885 493 MobiDBLite consensus disorder prediction 1 15 - -
Dod01g2885 493 SUPERFAMILY RNA-binding domain, RBD 114 282 IPR035979 GO:0003676
Dod01g2885 493 Coils Coil 49 84 - -
Dod01g2885 493 SMART rrm2_1 118 191 IPR003954 GO:0003676
Dod01g2885 493 MobiDBLite consensus disorder prediction 87 103 - -
Dod01g2885 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 362 IPR000504 GO:0003723
Dod01g2885 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 265 IPR000504 GO:0003723
Dod01g2885 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 189 IPR000504 GO:0003723
Dod01g2885 493 Gene3D - 280 403 IPR012677 -
Dod01g2885 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Dod01g2885 493 PANTHER - 20 491 - -
Dod01g2885 493 MobiDBLite consensus disorder prediction 37 86 - -
Dod01g2885 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Dod01g2885 493 PANTHER GEO13361P1-RELATED 20 491 - -
Dod01g2885 493 MobiDBLite consensus disorder prediction 449 493 - -
Dod01g2885 493 CDD RRM_SF 119 191 - -
Dod01g2885 493 MobiDBLite consensus disorder prediction 1 103 - -
Dod01g2885 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 279 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod01g2885 Dod-Chr1 69314919 69320551 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2885 119 459 Eukaryotic Initiation Factors Gene Family AT4G34110 24.211 5.51e-14 72.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2885 K13161 - gmx:100798476 634.409
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2885 01 69314919 69320551 Dod01g2885 01 69314919 69320551 ECH