Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2839 ATGCGTTCCAACAACGCCAACACTTCTGCAGCAGGCAGCAGGAGGAGCAAAAACTCTGCTGCTGCAAGCACTGGCCGCCACCCTTTGTACCGAGGAGTTAGGCGCAGGAGCAGTGGCAAATGGGTTTCCGAAATTAGGGAGCCCAAGAAGCCCAACAGGATTTGGTTAGGGACATTCCCTACGCCAGAAATGGCTGCTATTGCTTATGATGTGGCTGCTCTTGCCCTTAAGGGCAAGGATGCTGAGCTGAACTTCCCTGACTCGGCTCCCTCTTTGCCAGTCCCTGCATCTTCCTCTGCCTGTGACATTCAGGTGGCTGCAGCTAGTGCTGCAGCTGCTATCGGGGCAGCAAAAGATGCTCTTGAAGGAAGCCAAGAAGGGAATAATAATGTTTCTGTTGCACAAGAGGTGGTGATGGGGGAAGGGCGGAATGATAATGAGTTTATCGATGAGGATTTGATCTTTGATATGCCCAATGTTCTGGTCAACATGGCTGAGGGAATGCTTCTCAGCCCTCCTCGTTTTGACATTGGTGATGAGTATGGTGCAGCGGAATACATGGGTGAAGACCAAAACTTGTGGAGTTACTCGTATTTCCCATGA 603 0.5091 MRSNNANTSAAGSRRSKNSAAASTGRHPLYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKDAELNFPDSAPSLPVPASSSACDIQVAAASAAAAIGAAKDALEGSQEGNNNVSVAQEVVMGEGRNDNEFIDEDLIFDMPNVLVNMAEGMLLSPPRFDIGDEYGAAEYMGEDQNLWSYSYFP* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2839 200 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Dod01g2839 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 196 - -
Dod01g2839 200 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Dod01g2839 200 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Dod01g2839 200 MobiDBLite consensus disorder prediction 1 41 - -
Dod01g2839 200 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Dod01g2839 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 196 - -
Dod01g2839 200 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Dod01g2839 200 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Dod01g2839 200 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Dod01g2839 200 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Dod01g2839 200 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2839 Dod-Chr1 68619945 68620870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2839 25 196 AP2-EREBP Transcription Factor Family AT2G36450 64.943 1.05e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g2839 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2839 - - gmx:100813781 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2839 01 68619945 68620870 Dod07g0210 07 2662489 2663182 PCT
Dod07g0211 07 2685661 2686581 Dod01g2839 01 68619945 68620870 PCT