Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2832 ATGTGGGATGGAATGAACTCTAGAATGACTGGTGATGGTGCAGCCAGTGTTCCCAACAACTTGAATGACCCATGGACGGGTGGTGATGATGAGAATCTGGAAGGTGAGGATCACCTCCAAAGTACACACCCTTTCAGCGTAAAGGTTGATAGAGAAATATCCACTGTCAGGAAACGACCAGCTGCACTTGGGGGGCAGTCATCATTTTCATGGCAATTGCAAGAGCAGAGATCAATTGAAAAGTTGAATATGAAGCCAGGTCACTCGGAAGGATTTATGTCCAATCTTGGTGGCTTATCAGCCAATATAAGTTCTTTAGTTGCCAGGATGGGCAATCGGTGTTTCATGTCGAATGTAACCACTGGATCAACCGAAACTATGGGACCAAAGCAATTTGATTCCGTGGGAGCTGAATCCACTTCTGGGCAGTCACCTTTGCGGCAACAGTCTCCATCACTGCCAGTAACAGCTGAGCAAGACCATCCCCAGGCTCCTAAAACATCTCCATTTTTGGGAGGTCTGCATAGCCAATATGTTAGAGATCGACCACCTGCCCTTCCTCCCAATGCTCAAGTTGGTAATTTGCACAGATCAAGGGAAACAGATTTGCCGGGTCCATTATCTTCAGTGACTTTTTTCCAGCCAAGGCATCAACAGCTGGGCTCTTCCCAGATTGCTGTCAAAACTAAGAAGCCACCCCACTTTAAAGTTTCTTTGGCCGGTGAAACTTCAGAACAGTCAACCACAAGTTGTTTGTCTGCTGCAGCTGTGAAGAGTGGAATCTTATCCAACAGATCAATTACAAGCAGTTTTCCTAGTACAAGTAGTCTAGCTACGAGGAATCTTCCATCTGAACTAGGGGTTCAACCAACTCGGTCAGGTGGACCTTCCCCTGTCTCATTAATTTCTTCAGGGTCTGAAGTTGCATCACCATCTTTATTAGTTCCTTTGAATGATGATTTGTCTGTTCCACCAAATGTACCTCAAGGAAAAGCTGGGCAACGGCCAAGGGTGTCTACACAACTGCCAGCTTCTTCTAATGTGAGCAGTGTCTCACCTCCAACCTCAAATGACACCAAAAATAATTCCTTAAATCCGATTGCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCTGCAGAAACAGAGTCACCAACTGAGGTACCAAAGGAGGCACTTGTTGGATTGGAGGAACAAACTGAAAGCATTACTGCCAGTAGCCCTTTGCCAGTTGCTTCAGTTTCTGGTTCTGCAGCTGTCCCAGTACCATCTTCCAGAGATGAGGTAGATGACACAAAAACTGCCCTTACCTTACATCAGTCAACCAGCACTGAATTCGTTGGTATCATTGGCTTTGATTTTAAGCCTGATGTAATCCGAGAGTTGCATCCTGCTGTAATCAAGGAATTATTGGATGATCTCCCACATCATTGCGGAGTTTGTGGTATTAGGCTTAAACAGGAAGAATGGTTAAATAGACACTTGGAGTGGCATTCCACGAGGGAAAGAGAGCAAAGTGGTTTAACTACAGCATCCAGAAGATGGTATGCAAATTCAGATGACTGGATTGCCGGCAAGGCTGACTATGCATCTGAGGTTAGTGACTTTGTAGATGTATATGGTGAGAAAACAGGCAGGAGTCAATTGGATACTATGGTTCTAGCCGATGAGAAGCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTGAGGAAAGGGATGAATGGATGTTCAGAGGGGCTGTTTACATGAACAACTCAGATGACAATGGTGAGATGGAAAGCAGAAATGTGGGGCCCATCATTCACGCCAAATGCTTATCAGAAAACTCATTATCCAGTGTCATGAAGATGGAACAGGATTAA 1884 0.448 MWDGMNSRMTGDGAASVPNNLNDPWTGGDDENLEGEDHLQSTHPFSVKVDREISTVRKRPAALGGQSSFSWQLQEQRSIEKLNMKPGHSEGFMSNLGGLSANISSLVARMGNRCFMSNVTTGSTETMGPKQFDSVGAESTSGQSPLRQQSPSLPVTAEQDHPQAPKTSPFLGGLHSQYVRDRPPALPPNAQVGNLHRSRETDLPGPLSSVTFFQPRHQQLGSSQIAVKTKKPPHFKVSLAGETSEQSTTSCLSAAAVKSGILSNRSITSSFPSTSSLATRNLPSELGVQPTRSGGPSPVSLISSGSEVASPSLLVPLNDDLSVPPNVPQGKAGQRPRVSTQLPASSNVSSVSPPTSNDTKNNSLNPIANLLSSLVAKGLISAETESPTEVPKEALVGLEEQTESITASSPLPVASVSGSAAVPVPSSRDEVDDTKTALTLHQSTSTEFVGIIGFDFKPDVIRELHPAVIKELLDDLPHHCGVCGIRLKQEEWLNRHLEWHSTREREQSGLTTASRRWYANSDDWIAGKADYASEVSDFVDVYGEKTGRSQLDTMVLADEKQCLCVLCGELFEDVYCEERDEWMFRGAVYMNNSDDNGEMESRNVGPIIHAKCLSENSLSSVMKMEQD* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2832 627 ProSitePatterns Zinc finger C2H2 type domain signature. 480 500 IPR013087 -
Dod01g2832 627 MobiDBLite consensus disorder prediction 120 163 - -
Dod01g2832 627 MobiDBLite consensus disorder prediction 1 46 - -
Dod01g2832 627 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 2 624 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Dod01g2832 627 MobiDBLite consensus disorder prediction 333 364 - -
Dod01g2832 627 MobiDBLite consensus disorder prediction 120 205 - -
Dod01g2832 627 MobiDBLite consensus disorder prediction 268 364 - -
Dod01g2832 627 MobiDBLite consensus disorder prediction 31 46 - -
Dod01g2832 627 MobiDBLite consensus disorder prediction 406 430 - -
Dod01g2832 627 MobiDBLite consensus disorder prediction 12 26 - -
Dod01g2832 627 MobiDBLite consensus disorder prediction 268 311 - -
Dod01g2832 627 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 2 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2832 Dod-Chr1 68546483 68550396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2832 450 617 C2H2 Transcription Factor Family AT4G04885 36.257 8.20e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2832 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2832 K14400 - gmx:100788958 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2832 01 68546483 68550396 Dod07g0202 07 2584340 2591814 PCT