Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2830 ATGAACCCCAACCTCCAAAATGACCCTCCCAACAACATTGCGGAATCCAAGGCTAATAAAGCTCCACCTCACGCGTTTTCTTACCCTCGTCCGATGTGGGACGTCTCAACTATGAATCCAACGGATGAGGAAAGAGGAGCTTCAGCTTCTTTGCCACTACCTTCATCATCTTGCGGCGCCGAGTTTGATGACAACGTTGGTTCGCCACAGCCGCTTGAATGCTTGCAAGGGAACCCGGTTCCTCCGTTCCTGTCCAAAACCTTCGATCTAGTGGACAATCCTTCGCTGGGCCCCATCATATCCTGGGGCTCCTCAGGTTCGAGTTTCGTGGTGTGGGATCCTGTGGAGTTCTCAAGACACATCTTGCCAAGGAACTTCAAGCATAACAATTTCTCAAGTTTTGTTCGCCAGCTGAATACTTATGGATTCCACAAGATTGATGCCGATAAGTGGGAGTTTTTCAATGAGTCTTTCCAGCGTGGAAAGAGACATCTTCTGAAAAACATCCAAAGGCGCAGGCCACCTCAATCTCAGCAAGTTGGGTGCTATATTGGGCCTGGCGATGCAACAAAGCCTGGACTTGATGTTGAGATAGAAAGACTGAGGAAGGAGAGGAATGTGTTAACGCAAGAGGTGATTGAATTGCAACAACAGCAGAGAACAACAGTTCAACATGCACGAGAAGTGAATCAGAGGCTCCAATCTGCAGAGCTTAGACAGAAACAAATGGTTTCTTTCCTGGCAAAGTTTTTTCAAAACCCAACCCTTCTAGCCGGCATTAAGCGTGAGAAGGAACAAAGAGTTATAGGTTCCCCTAGGGTGAGAAGGAAGTTTGTCAAGCACCAGCAAGACCAAACAGGAACATCAGGTTCTTTGGAGGGAGGGCAAATTGTGAGATACCAACCTGATTGGAGAAACCCAGTTCCCATTGAACAGTCTCCTCAGTACTTTTCACAGGGCATGACAAGAGAATTGAGTGAAGGTGAGGAAAATCTGACTTTGCAGTTTGAAACTGCTGTATCAGATGAATTAGGTGCGGTGCATGAGGCTATACCAACTGCAAACATCATAGGAGAAGGATCATCAAGCTTTGGACTTGAAGATCCCATTTTCAAAGGGAAAAATGTCATGAGCCCAAATCAAGAAGTTCCTGAAGAGTTCTTTGTTTCTTTCCCAGAGGATTTCATTAAGGAAACAGGATTTCCTGAGTTTCCCCCTGTTGGAACCGAAAGCTTAGATATATGGAACACCAACTTTAATGTTAGTGGCTCTGTGAATGAGCCATGGGGAGATCCTATCTACTATGAAATGCCAGGATATGGAATCACAAGTGGTATCTCAGACGTGTGGGATATGAGCTCGCTGCAGGCTGCAGGAAATTTGCCAAGTGATGAGTATCCTCTTGGTGAAATAGAAAGTCAATCTGGCCAGCTAGAAGATAATAGAAATAAGAATGTAGGTCCATAG 1467 0.456 MNPNLQNDPPNNIAESKANKAPPHAFSYPRPMWDVSTMNPTDEERGASASLPLPSSSCGAEFDDNVGSPQPLECLQGNPVPPFLSKTFDLVDNPSLGPIISWGSSGSSFVVWDPVEFSRHILPRNFKHNNFSSFVRQLNTYGFHKIDADKWEFFNESFQRGKRHLLKNIQRRRPPQSQQVGCYIGPGDATKPGLDVEIERLRKERNVLTQEVIELQQQQRTTVQHAREVNQRLQSAELRQKQMVSFLAKFFQNPTLLAGIKREKEQRVIGSPRVRRKFVKHQQDQTGTSGSLEGGQIVRYQPDWRNPVPIEQSPQYFSQGMTRELSEGEENLTLQFETAVSDELGAVHEAIPTANIIGEGSSSFGLEDPIFKGKNVMSPNQEVPEEFFVSFPEDFIKETGFPEFPPVGTESLDIWNTNFNVSGSVNEPWGDPIYYEMPGYGITSGISDVWDMSSLQAAGNLPSDEYPLGEIESQSGQLEDNRNKNVGP* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2830 488 Pfam HSF-type DNA-binding 83 172 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod01g2830 488 Coils Coil 198 218 - -
Dod01g2830 488 MobiDBLite consensus disorder prediction 1 62 - -
Dod01g2830 488 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 70 474 IPR027725 -
Dod01g2830 488 MobiDBLite consensus disorder prediction 461 488 - -
Dod01g2830 488 MobiDBLite consensus disorder prediction 474 488 - -
Dod01g2830 488 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 70 474 - -
Dod01g2830 488 ProSitePatterns HSF-type DNA-binding domain signature. 122 146 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod01g2830 488 Gene3D - 76 173 IPR036388 -
Dod01g2830 488 SUPERFAMILY "Winged helix" DNA-binding domain 78 172 IPR036390 -
Dod01g2830 488 SMART hsfneu3 79 172 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod01g2830 488 PRINTS Heat shock factor (HSF) domain signature 134 146 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod01g2830 488 PRINTS Heat shock factor (HSF) domain signature 83 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod01g2830 488 PRINTS Heat shock factor (HSF) domain signature 121 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2830 Dod-Chr1 68533969 68536961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2830 69 435 HSF AT5G03720 44.974 2.87e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dod01g2830 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2830 K09419 - gmx:100788429 479.944