Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2820 ATGGAAATGATGAAGGAAGGCACGGTTTCCGGTTCACCCCGGAACACAGACTCCGGTTCACCGGCACAACCGGTGACCACCCAGTTGCCCCAAGTGATGAACTTGAACGTTGGAAACACCGGAGGACCAACACCACCGCCACAACAACCATTAGCCACAGCTACAATGACAACAACAACAGCAACAGCAGCAGCAGCAGGTGGAACGGGACAAGGGAGTTTGGATTTGTTTGGGAAGAAGAAGAGAGGGAGGCCAAGAAAATATGACTCAGAAGGGAACTTGAGGGTGGTGACATCACATTCACACCAGCAGGGTGCAGCAGCAGCTGCAGGACCACCGGGATTTTCTCTGACGCCAGGTTCAGCTCCTGAGTTCTCATCCAAACGGGGTCGTGGAAGGCCACATGGCTCTGGCAACTGGAACCTCCTTGCTTCTTTAGGTATGTTTGCAGGCGCAACCGGTAGTGATTTTACACCTCATGTGGTGACAGTTTATGCTGGAGAGGATGTTGCTGGAAAGATCTTCTCATTCGCGCAGAAGGGTCCCATAGGAATATGCATTCTTTCTGCAAATGGAGCTATATCTAAAGTTACCTTGCGCCAACCTGGTTCTTCTGGTGGCATATTGACTTATGAGGGTCGTTTTGAGATTTTATCCTTGTCTGGGTCATTCACGGTCATTGAAAGTGGTAGCATAGTTCCAAATGGTGGATTGAGTGTCTCATTGGCTGGCCCTGATGGTCGTGTGATAGGAGGGGGTGTTGCTGGCTTATTGACAGCTGCTGGCCCAATCCAAATTGTAATTGGAAGCTTCATGCCAAATGGTCACAAGAGCCATAAAAGGAAACAGCACCGTGAACATACAGCAGCCTACCGCGCTTCAGGTGCTCCACGTGCTCCAGAGACAGTGGCAGGAGCAGGACCTATCTCACAATCAAATCCTGGTAGTGAAAACATTCTGAGACCTGCACCTCAGTTACCAGAACAAGGTCAGAGAGAATCTGTCAGTGCAACAAGTGATAAACTGAACTTAGATGACACACTCAATGCTGCTGATTGGAATGGTTCTGAAGATTTTTCAGATCATAGGCCATCCCCAGACATCAACATCTCTTTGCGTGATGATTAG 1128 0.492 MEMMKEGTVSGSPRNTDSGSPAQPVTTQLPQVMNLNVGNTGGPTPPPQQPLATATMTTTTATAAAAGGTGQGSLDLFGKKKRGRPRKYDSEGNLRVVTSHSHQQGAAAAAGPPGFSLTPGSAPEFSSKRGRGRPHGSGNWNLLASLGMFAGATGSDFTPHVVTVYAGEDVAGKIFSFAQKGPIGICILSANGAISKVTLRQPGSSGGILTYEGRFEILSLSGSFTVIESGSIVPNGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVIGSFMPNGHKSHKRKQHREHTAAYRASGAPRAPETVAGAGPISQSNPGSENILRPAPQLPEQGQRESVSATSDKLNLDDTLNAADWNGSEDFSDHRPSPDINISLRDD* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2820 375 MobiDBLite consensus disorder prediction 1 136 - -
Dod01g2820 375 SMART AT_hook_2 79 91 IPR017956 GO:0003677
Dod01g2820 375 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Dod01g2820 375 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 279 - -
Dod01g2820 375 ProSiteProfiles PPC domain profile profile. 154 296 IPR005175 -
Dod01g2820 375 MobiDBLite consensus disorder prediction 329 354 - -
Dod01g2820 375 MobiDBLite consensus disorder prediction 51 67 - -
Dod01g2820 375 Gene3D - 159 290 - -
Dod01g2820 375 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 271 IPR005175 -
Dod01g2820 375 MobiDBLite consensus disorder prediction 356 375 - -
Dod01g2820 375 MobiDBLite consensus disorder prediction 272 375 - -
Dod01g2820 375 MobiDBLite consensus disorder prediction 77 93 - -
Dod01g2820 375 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 373 IPR039605 GO:0003680
Dod01g2820 375 CDD DUF296 158 271 IPR005175 -
Dod01g2820 375 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 11 373 - -
Dod01g2820 375 MobiDBLite consensus disorder prediction 9 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2820 Dod-Chr1 68403484 68407543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2820 45 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.800 6.11e-57 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2820 - - cit:102617101 377.096