Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2813 ATGGAATGGGATGAGAGCACAAGATCCTTTGTTCCTCGAGCACAGCCTTCCTTAAGCTTCCTCTACAACTATAACAACAACCCATATCCAGGAATGGAAGTGAAACAAGCAGCATTCGGGGAGACAGCACCACAAGGGTTGCTTCATGAGGCAATGGAGCAGGAAATGAAGTACGGAAACCGGGAGAACAAGAAGCGACTAACAAGCAACCAGATTGAGTCACTGGAGAGAAGTTTCCAGAAGGAGATAAAGTTGGACACTGATAGGAAGATGAAGCTTTCCAGGGAGCTAGGTCTCCAACCTCGCCAAATTGCTGTTTGGTTCCAGAACAGGCGTACAAGGTGGAAGGCCAAGCAGCTTGAACACTTGTACCTTGCACTTAAACAAGAATTTGACCACATCTCCCAGGAAAAGCACAAGCTTCAACAAGAGGTTATGCAGTTGAAGGCAATGCTGAGACAGCAAGCTGGTTATACAGAAATGTTAGGGAAAGAAACGGTACAAAGCACGCAGAGATGTTGCTTGGATCCAACAAGGCACGGGGAATGGTTCATAATCAGTTGA 564 0.4645 MEWDESTRSFVPRAQPSLSFLYNYNNNPYPGMEVKQAAFGETAPQGLLHEAMEQEMKYGNRENKKRLTSNQIESLERSFQKEIKLDTDRKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYLALKQEFDHISQEKHKLQQEVMQLKAMLRQQAGYTEMLGKETVQSTQRCCLDPTRHGEWFIIS* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2813 187 CDD homeodomain 61 119 IPR001356 GO:0003677
Dod01g2813 187 SUPERFAMILY Homeodomain-like 50 120 IPR009057 -
Dod01g2813 187 Pfam Homeobox associated leucine zipper 118 152 IPR003106 GO:0006355|GO:0043565
Dod01g2813 187 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Dod01g2813 187 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Dod01g2813 187 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 171 IPR045224 GO:0003700
Dod01g2813 187 Coils Coil 117 151 - -
Dod01g2813 187 SMART HOX_1 60 122 IPR001356 GO:0003677
Dod01g2813 187 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Dod01g2813 187 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Dod01g2813 187 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Dod01g2813 187 Gene3D - 45 122 - -
Dod01g2813 187 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2813 Dod-Chr1 68301484 68302721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2813 1 148 Homeobox Transcription Factor Family AT5G03790 49.693 1.97e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod01g2813 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2813 - - ahf:112757138 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0184 07 2366306 2368590 Dod01g2813 01 68301484 68302721 PCT