Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2801 ATGGCGGTTTCTCCGACGGTGGCCGCGGCGGCACCTCCGGCGTCTCTTTACGTCGGCGACCTCCACCCTGATGTCAGCGACGGACAGCTGTCGGAGGCGTTCTCGGAGTTCAAGAGCCTCGCCTCCGTTCGCGTCTGCAGGGACTCCTCCACCGGCAGGTCACTCTGCTACGGTTACGTTAACTTCGTCTCTCCACAAGACGCGATTCGAGCTATTGAGCTGAAGAATCATTCTACACTGAATGGGAAAGTGATAAGGGTCATGTGGTCGCGTCGTGATCTTGATGTAAGGAAAAGTAACATAGGCAACGTGTTTGTTAAGAACCTGGATGAATCAATAGACAATGCAGGGTTGCAAGATATATTTAAAAAATTTGGGAATATTTTGTCCTGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCAGAGGATTCAGCAATTACTGCCATCGAGAAGCTGAATGGCTCCACTATTGGTGATAAGCAAATATATGTGGGGAAGTTTGTCAAGAAAACTGACCGCGTTGTGCCTGGCCCTGATTCCAGATATACAAACTTGTTCATGAAGAATTTGGACCCAGATACTACAGAAGCAGTTCTGCAGGAGAAGTTTTCATCTTTTGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACAACAATGGGATATCAAAGGGTTTTGCCTTTGTGAACTATGAAAACCCTGATGATGCTAAAAGTGCAATGGAAGCAATGAACGGATCACAATTTGGTTCAAAGATTCTATATGTAGGCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCATAACCAATTTGAGGAGAAACGTAAGGAACAAATCTTAAAATACAAGGGATCAAACATTTATGTGAAGAACATCGATGACAATGTTAGTGATGATGAACTGCGAGATCATTTTAGTGCATGTGGCACAATAACATCTGCAAAAGTTATGCGGGATGACAAAGGGATAAGCAAAGGGTTTGGTTTTGTTTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAGCACTTTTCATGGATTCATGTTTCATCGGAAACCACTGTATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGCAAGCACAGCTGCAGCTCCAATATGCACAGCAAATAGCAGGATTAGCTGGACCTTCAACTCCCATTATCCCTGGTGGATATCCTCCCTACTACTATGCTACTGGTGTTGTTTCACATGTTCCTTCCCGAGCTGGGCTGATGTATCAACATCTGGCATTGAGGCCAGGATGGAGGGCTAGTGGCTTGGCACCTCCTGCTAGACCATTCCAACATCAATCAGTTCCTGTTTCACAGGTTCCAAACAATGCTAGGCAGCATAGGCAAAACAAGGGCAGGATGAATAGCAATTCAAGTTCACAGGGAAGTGCTTATTCTGGTACTACACAAGCACAGCAGACTCCTCAATTAGTGGCCTCTTCAAAAGTGTCAAGTACTCGACAGCAAACTGGACAGGCCAAGTATGTACCTAGTGGGCGCCGCCATGAGATGGAAAAAGGATCTGGATTCTCATCTGCTGGTTCAAACTCTGATGGAGTGTCCCAGGGATCAGAAATGCTTCATAGCATACTTGCTGCTTCTTCTCCTGAGCAGCAGAAACAGATACTTGGCGAGCGTATTTACATGCATGTCGAGAAAATGAAGCCTGCCCTTGCAGCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTTCTGGAATCACCGGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTATGCAAGTGCTAGAGAAATCTAAAACCAAAGTTTCTGGCCAGGATGTTCTTCATTCAAAATACTTTTCAGCTGAGGTTGCAGTGAACTGA 1911 0.4553 MAVSPTVAAAAPPASLYVGDLHPDVSDGQLSEAFSEFKSLASVRVCRDSSTGRSLCYGYVNFVSPQDAIRAIELKNHSTLNGKVIRVMWSRRDLDVRKSNIGNVFVKNLDESIDNAGLQDIFKKFGNILSCKVVMSEDGKSKGYGFVQFESEDSAITAIEKLNGSTIGDKQIYVGKFVKKTDRVVPGPDSRYTNLFMKNLDPDTTEAVLQEKFSSFGKIVSLAIAKDNNGISKGFAFVNYENPDDAKSAMEAMNGSQFGSKILYVGRAQKKAEREQILHNQFEEKRKEQILKYKGSNIYVKNIDDNVSDDELRDHFSACGTITSAKVMRDDKGISKGFGFVCFSTPEEANKAVSTFHGFMFHRKPLYVALAQRKEDRQAQLQLQYAQQIAGLAGPSTPIIPGGYPPYYYATGVVSHVPSRAGLMYQHLALRPGWRASGLAPPARPFQHQSVPVSQVPNNARQHRQNKGRMNSNSSSQGSAYSGTTQAQQTPQLVASSKVSSTRQQTGQAKYVPSGRRHEMEKGSGFSSAGSNSDGVSQGSEMLHSILAASSPEQQKQILGERIYMHVEKMKPALAAKITGMLLEMDNGELLLLLESPESLSAKVEEAMQVLEKSKTKVSGQDVLHSKYFSAEVAVN* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2801 636 Pfam Poly-adenylate binding protein, unique domain 547 611 IPR002004 GO:0003723
Dod01g2801 636 Gene3D - 536 617 - -
Dod01g2801 636 PANTHER POLYADENYLATE-BINDING PROTEIN 536 620 - -
Dod01g2801 636 PANTHER POLYADENYLATE-BINDING PROTEIN 8 520 - -
Dod01g2801 636 SMART poly_2 551 614 IPR002004 GO:0003723
Dod01g2801 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Dod01g2801 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 262 IPR000504 GO:0003723
Dod01g2801 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 172 IPR000504 GO:0003723
Dod01g2801 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 366 IPR000504 GO:0003723
Dod01g2801 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 373 IPR000504 GO:0003723
Dod01g2801 636 Gene3D - 278 384 IPR012677 -
Dod01g2801 636 PANTHER RNA BINDING PROTEIN 536 620 - -
Dod01g2801 636 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 14 611 IPR006515 GO:0003723
Dod01g2801 636 MobiDBLite consensus disorder prediction 525 539 - -
Dod01g2801 636 MobiDBLite consensus disorder prediction 448 511 - -
Dod01g2801 636 SMART rrm2_1 194 266 IPR003954 GO:0003676
Dod01g2801 636 SMART rrm2_1 103 175 IPR003954 GO:0003676
Dod01g2801 636 SMART rrm2_1 297 369 IPR003954 GO:0003676
Dod01g2801 636 SUPERFAMILY RNA-binding domain, RBD 294 385 IPR035979 GO:0003676
Dod01g2801 636 CDD RRM1_I_PABPs 15 93 - -
Dod01g2801 636 Gene3D - 103 175 IPR012677 -
Dod01g2801 636 SUPERFAMILY RNA-binding domain, RBD 13 180 IPR035979 GO:0003676
Dod01g2801 636 SUPERFAMILY RNA-binding domain, RBD 186 277 IPR035979 GO:0003676
Dod01g2801 636 Gene3D - 5 102 IPR012677 -
Dod01g2801 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Dod01g2801 636 PANTHER RNA BINDING PROTEIN 8 520 - -
Dod01g2801 636 SUPERFAMILY PABC (PABP) domain 543 622 IPR036053 GO:0003723
Dod01g2801 636 MobiDBLite consensus disorder prediction 440 539 - -
Dod01g2801 636 SMART rrm1_1 297 369 IPR000504 GO:0003723
Dod01g2801 636 SMART rrm1_1 103 175 IPR000504 GO:0003723
Dod01g2801 636 SMART rrm1_1 15 88 IPR000504 GO:0003723
Dod01g2801 636 SMART rrm1_1 194 266 IPR000504 GO:0003723
Dod01g2801 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723
Dod01g2801 636 Gene3D - 178 277 IPR012677 -
Dod01g2801 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Dod01g2801 636 CDD RRM2_I_PABPs 101 176 IPR045305 -
Dod01g2801 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
Dod01g2801 636 CDD RRM4_I_PABPs 295 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2801 Dod-Chr1 68132179 68137185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2801 14 634 Eukaryotic Initiation Factors Gene Family AT2G36660 53.291 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2801 K13126 - gmx:100779547 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2801 01 68132179 68137185 Dod07g0169 07 2247442 2253024 PCT