Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2790 ATGGATCAGCCTCCCGTCGTAGCAGCTCCGGCGCTGGATTCCGATTACGGTGACAGCAGCAGCAAGACACGGAAAGTTTCTGTGGTGAACGGATACGTTGTTTATACCAGAGCCAAAAAGAGGCACTGGGATTCACGTAACGGTTTTCCTGAGAGCAAGGAATCGAAGAGGTTCAGGGCGTGCGAAAATGCGGAAGCAAATGCAGCAGAGTTTCCAGTAAACGACAGTAACGAGCTCAAACGCGAGCTCAAAGAGGTTTCCTCGAGCAATGTTGTGGTTAGGACATTTAGGAGGCGAACAACGACACCGAAAGCGAATGTCGTTTCAAATGGTGAAGAACCTGGTAATGGTGAATTGAACGTTTCCGTGAGCGGAATATCGAGAAACAAGATGGAATTTAAGATGTCGAAGAAGATTGTGGTGAACAGGAAGCCGATGACCGTGAAGGAGCTCTTCCGTACGGGTCTACTTGATGGAGTATCGGTGGTTTACATGGGCGGAATTAAGAAGGCTTCAGGATTACGGGGTGTTATTAGAGATGGGGGAATATTGTGCTCATGCTGTCTGTGCAATGGACGCAGGATTATTCCACCCTCCCAGTTCGAGATCCATGCTTGCAAGCAATATAGGAGAGCAACACAGTATATTTGCCTTGAAAATGGGAAGAGCCTGCTCGGTCTATTGAGAGAATGCAGGGGAGCTCCCCTGCATACTTTGGAGGCGACAGTTCAAAACTTCGTTTGTTCTCCACCTGAAGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTTTCCCTGCTTCATGTGTGGCAAGAGTGGGGCCCTTATGCCGTTATTGTGTGGAATCAAGGAAACCCGAAGACAGTTCTACTGACGCCGTTGGCAAAAGAGTCAGGTCCTCTGAACCAGTTCCGGACTCGAAACCATGCAGTACTTCCGAGCTGTCTATCTCTTCACAAAATAAGAGACAGAGGAATAAAAGAACAAAGTCATCAAATCGGGTTAGCAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTACCGAAGAAGAAAATTTTGTGGAAGACGAAAAAGAAATCACTGTCAGGAAAGTTAAGGACCCAGAAAATTACTTCAAATTCAAAGTTTTTATCTTCACAAAATAAAAGTCAATGGAGAATAACTAAGAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAAGAAAATGGATTACCAGATGGAACTGAAGTGGCTTATTATGCTCGTGGACAGAAATTGCTTGAAGGCTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAATACTGAGGTCAGCCCCTCGCAGTTTGAGGCCCATGCAGGATGGGCTTCTCGCAAGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCTCTTCATGAATTGGCAATATCTCTCTCAAAAGATCGAAAATACTCTGCAAATGATAATGATGATCTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGTATTCCGCATGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTTGCATACAATGCCAATGCTATGGCAGCTGGAAGGGTTGAAGGAATTGATCCTATTGAGCAGATAAACAATAGATGCATCCGCATAGTCAAAGACATTGAAGCTGAGCTTAGTGCATGTGCTTTATGCGGGGGTGTTGACTTCAGCAGATCTGGTTTCGGACCACGCACAATAATACTCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAACTGCCAGAGGGAAACTGGCTTTGTTGTAATGATTGCACAAGAATACATTCTACTTTGGAGAACCTTTTGTTTAGGGGTGCTGAGAGACTCCCTGAATCTCTGCTGGGCATTATAAAGAAGAAGCATGAGAAAAGAGGATTAGAACCCCTCAATGATATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTAGAGGCTGTTTCAATCTTTCATGAATGTTTTAACCCTATAGTTGATGCAGCTAGTGGATGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTACGGGGACAGGAGTTTGGAGGAATGTATTGTGCATTATTAATGGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAGTTTTTGGCACAGATATTGCCGAACTACCCTTAGTTGCAACAAGTAACAAGAACCATGGAAAGGGTTACTTCCAAACTCTCTTCTCTTGCATTGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAACCTTGTTCTACCAGCTGCAGAAGAAGCAGAATCCATATGGACGGATAAATTTGGGTTTAGCAAGATGATACCGGATCAGCTTTCCAGTTATAGAAAGAACTGCCATCAGATGGTGTCATTCAAAGGGACAAACATGCTGCATAAAATTGTGCCTCCATGTCGGATCATCAATAATCAATCATGA 2571 0.4352 MDQPPVVAAPALDSDYGDSSSKTRKVSVVNGYVVYTRAKKRHWDSRNGFPESKESKRFRACENAEANAAEFPVNDSNELKRELKEVSSSNVVVRTFRRRTTTPKANVVSNGEEPGNGELNVSVSGISRNKMEFKMSKKIVVNRKPMTVKELFRTGLLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRIIPPSQFEIHACKQYRRATQYICLENGKSLLGLLRECRGAPLHTLEATVQNFVCSPPEEKYFTCKRCKGCFPASCVARVGPLCRYCVESRKPEDSSTDAVGKRVRSSEPVPDSKPCSTSELSISSQNKRQRNKRTKSSNRVSSSNSSKSASVPILPKKKILWKTKKKSLSGKLRTQKITSNSKFLSSQNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEVSPSQFEAHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPHGDWYCQFCQNMFQREKFVAYNANAMAAGRVEGIDPIEQINNRCIRIVKDIEAELSACALCGGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLFRGAERLPESLLGIIKKKHEKRGLEPLNDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGCDLIPAMVYGRNVRGQEFGGMYCALLMVNSSVVSAGMLRVFGTDIAELPLVATSNKNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMIPDQLSSYRKNCHQMVSFKGTNMLHKIVPPCRIINNQS* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2790 856 ProSitePatterns Zinc finger PHD-type signature. 491 530 IPR019786 -
Dod01g2790 856 MobiDBLite consensus disorder prediction 331 346 - -
Dod01g2790 856 PANTHER AUTOIMMUNE REGULATOR 23 852 - -
Dod01g2790 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 637 IPR013083 -
Dod01g2790 856 MobiDBLite consensus disorder prediction 286 346 - -
Dod01g2790 856 CDD PHD1_AIRE 490 530 - -
Dod01g2790 856 SUPERFAMILY FYVE/PHD zinc finger 477 536 IPR011011 -
Dod01g2790 856 MobiDBLite consensus disorder prediction 1 23 - -
Dod01g2790 856 ProSiteProfiles Zinc finger PHD-type profile. 488 533 IPR019787 -
Dod01g2790 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 565 IPR013083 -
Dod01g2790 856 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 23 852 - -
Dod01g2790 856 MobiDBLite consensus disorder prediction 305 322 - -
Dod01g2790 856 SUPERFAMILY FYVE/PHD zinc finger 569 632 IPR011011 -
Dod01g2790 856 Pfam Tify domain binding domain 176 231 IPR032308 -
Dod01g2790 856 Pfam Tify domain binding domain 428 474 IPR032308 -
Dod01g2790 856 Pfam PHD-finger 491 532 IPR019787 -
Dod01g2790 856 MobiDBLite consensus disorder prediction 286 303 - -
Dod01g2790 856 SMART PHD_3 578 635 IPR001965 -
Dod01g2790 856 SMART PHD_3 490 531 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2790 Dod-Chr1 68012751 68020294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2790 137 853 PHD Transcription Factor Family AT2G36720 55.601 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod01g2790 TDBD 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2790 - - gmx:100802562 1327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2790 01 68012751 68020294 Dod07g0147 07 2040117 2049938 PCT
Dod06g1907 06 27938833 27944572 Dod01g2790 01 68012751 68020294 PCT