Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2789 ATGAGATCCAACAGAACCCTCTTATCGCTGTCCGGCTTTGTCATTTTTCTCTTTGCTGTCGTACTAGTTCATCATACCAAGCCTCCTTCTCCTACCGCTACCACTGCCGTTAGTCCTCAAGATAGTTTCAATTTTCAGCTCGGTGTATTTAGTAAGATTATAAAGCTTAGTGGCGCTCAAGATATTTTGCCTCTGCTACCAAGAAGACATCATCAACATCGGAGAAGGCAAAAGAATAAATGTGACAAAACCAAATGGGATTCCACGCTTATTGAAGACTATAATGTCACTCAAGTTTTCACGGTTGACCTGAAGGGTTGTGCTAACTTCAGTAGTGTGCAGAGCGCAGTTGATGCTGTTCGCGAATCTAGCTCTGAAACCACCCTTATCATAATCGATTCTGGTGCATACAGGGAGAAGGTGGTGGTGCAGGCCAACAAAACAAACTTGATAATTCAAGGACAAGGGTATCTTAACACATTCATAGAATGGAACGACACAGCGAATTCCACGGGTGGGACTTCACATAGCTACTCCTTTGCTATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCGGCCTTCACCGGGAGAGGTTGGGGCACAGGCGGTGGCACTTAGAGTTACTGGTGATCAAGTTGCGTTCTATGGGTGTGGATTTTATGGTGCGCAGGACACACTCAATGATGATAAAGGGAGACATTATTTTAAAGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCACTTTATGAGGATTGTGTTATCGACTCTATTGCAGAAGATGACTGGGATGGGGTTAGCGGGTCAATCACAGCTCAGGGGCGGCAATCGATGAATGAACCAACTGGGTTTTCCTTTGTGAATTGTAGCATTTTTGGGAGTGGTAAGGTGTGGCTTGGAAGAGCTTGGGGAGCCTATGCCACTGTGGTCTTCTCAACAACATTCATGTCCAAAGCGGTAGCTGCTGATGGATGGAACGATTGGAGAGATCCCTCTAGAGACCAGACCGTCTTCTTTGGGGAGTACAATTGTATGGGACCTGGAGCAAATTATACATCTAGAGTCTCTTACGCGAAACAACTCAGCGATGACGGAGCAATCTACTACATGAATATTTCCTACATTGATGGAAATGACTGGCTCGTTAATTATCCTCAAAAGTCAAAACTTTTCCATCCATTCATGTACAGGGGCAAACAATAA 1242 0.4404 MRSNRTLLSLSGFVIFLFAVVLVHHTKPPSPTATTAVSPQDSFNFQLGVFSKIIKLSGAQDILPLLPRRHHQHRRRQKNKCDKTKWDSTLIEDYNVTQVFTVDLKGCANFSSVQSAVDAVRESSSETTLIIIDSGAYREKVVVQANKTNLIIQGQGYLNTFIEWNDTANSTGGTSHSYSFAIFASKFTAYNISFKNTAPRPSPGEVGAQAVALRVTGDQVAFYGCGFYGAQDTLNDDKGRHYFKECFIQGSIDFIFGNARSLYEDCVIDSIAEDDWDGVSGSITAQGRQSMNEPTGFSFVNCSIFGSGKVWLGRAWGAYATVVFSTTFMSKAVAADGWNDWRDPSRDQTVFFGEYNCMGPGANYTSRVSYAKQLSDDGAIYYMNISYIDGNDWLVNYPQKSKLFHPFMYRGKQ* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2789 413 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Dod01g2789 413 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 402 - -
Dod01g2789 413 SUPERFAMILY Pectin lyase-like 98 394 IPR011050 -
Dod01g2789 413 Pfam Pectinesterase 102 390 IPR000070 GO:0030599|GO:0042545
Dod01g2789 413 Gene3D - 93 402 IPR012334 -
Dod01g2789 413 PANTHER PECTINESTERASE 14-RELATED 14 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2789 Dod-Chr1 68006603 68011602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2789 93 394 Carbohydrate Esterase AT1G05310 55.410 5.00e-120 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2789 - - gmx:100802034 640.573