Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2777 ATGAATATGCAGTTTGAAGAGGAACGTGTGGTGTGCAAGGATCACATGCAAATCATCAAGGGGAAGCGCACAAAGCGCCAAAGGCTACCATCACCACTCAGGCTAGCCATGCCTTCACCAACATCTTCAAGTGGCGGTTCCGGGGGCTTATTTGATCTCGCCACAACCACCGCGACAACCTTTTCCCCCTCCGCTTCAAATGAATTTAGAAGAACGGAAATAGAAGATGACAATGATGAGGACATGGCCAATTGCTTGATTCTCTTGGCTCAAGGCCATCACAATCACAATAAAGCCTCAAAGTCATCACATGAACATGTGGCCAACAACAAGGCAATAAGAGGGTTGTACATTTACGAGTGCAAGACTTGTAACCGGTGCTTCCCATCATTCCAAGCGCTTGGCGGCCACAGAGCCAGCCACAAGAAACCTAAGACAAACAACATTGGTATCACACAAGATCATCAAAAGCAAGCACCTACTTGTTCTACTACTTCTTTTGTGAATGAAGATGATCATCATAACTATGACTCCACAACAAGCACCACCCTCACCTTGCAAATATCAAACAGGCCTTTGTCGTATAGAAGCAGCAATGTGTCTACTCCTCCTAAATCTAAGGTTCATGAGTGTTCCATTTGTGGGGCTGAGTTCACATCAGGGCAAGCCTTGGGGGGTCACATGAGGCGCCACAGGGCTTTCTTGAGCATGGCTGCAACAACAACTTCATCATCTATGAGTGGGGCAACCAATGTTAACAATGGTGGCGCAGGGAGCACACATGAATCTCAAGAGAAGGCAAAGAAACCCAAGAACGTTCTGAAGCTGGACTTGAATCTTCCGGCGGCACCTGAGGATGATCATAGGGAGTCCAACAACAAGAAGTTTTCTATTCAGTCCAAAGAGAAAGTTATTGTCTTCTCTGCAAATTCTTTGGTGGATTGCCATTACTAA 954 0.4612 MNMQFEEERVVCKDHMQIIKGKRTKRQRLPSPLRLAMPSPTSSSGGSGGLFDLATTTATTFSPSASNEFRRTEIEDDNDEDMANCLILLAQGHHNHNKASKSSHEHVANNKAIRGLYIYECKTCNRCFPSFQALGGHRASHKKPKTNNIGITQDHQKQAPTCSTTSFVNEDDHHNYDSTTSTTLTLQISNRPLSYRSSNVSTPPKSKVHECSICGAEFTSGQALGGHMRRHRAFLSMAATTTSSSMSGATNVNNGGAGSTHESQEKAKKPKNVLKLDLNLPAAPEDDHRESNNKKFSIQSKEKVIVFSANSLVDCHY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2777 317 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Dod01g2777 317 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Dod01g2777 317 SUPERFAMILY beta-beta-alpha zinc fingers 118 231 IPR036236 -
Dod01g2777 317 PANTHER ZINC FINGER PROTEIN ZAT5 7 317 - -
Dod01g2777 317 MobiDBLite consensus disorder prediction 242 261 - -
Dod01g2777 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 231 IPR013087 -
Dod01g2777 317 MobiDBLite consensus disorder prediction 36 50 - -
Dod01g2777 317 Pfam C2H2-type zinc finger 119 144 - -
Dod01g2777 317 Pfam C2H2-type zinc finger 208 233 - -
Dod01g2777 317 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 7 317 - -
Dod01g2777 317 MobiDBLite consensus disorder prediction 22 50 - -
Dod01g2777 317 MobiDBLite consensus disorder prediction 242 272 - -
Dod01g2777 317 SMART c2h2final6 209 231 IPR013087 -
Dod01g2777 317 SMART c2h2final6 119 141 IPR013087 -
Dod01g2777 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Dod01g2777 317 Gene3D Classic Zinc Finger 116 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2777 Dod-Chr1 67634484 67635655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2777 18 317 C2H2 Transcription Factor Family AT5G03510 41.270 5.34e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2777 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2777 - - gsj:114399832 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2777 01 67634484 67635655 Dod06g1212 06 16222368 16223549 ECH
Dod01g2777 01 67634484 67635655 Dod01g2777 01 67634484 67635655 ECH
Dod01g2777 01 67634484 67635655 Dod10g1562 10 36322445 36323781 ECH
Dod01g2777 01 67634484 67635655 Dod03g2718 03 58818313 58818993 ECH
Dod01g2777 01 67634484 67635655 Dod07g0126 07 1508882 1510134 PCT