Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2772 ATGCTCCGGAAGACCTGCGTTCTGCTAATCTCCATTCTGGGTTCGATTCTACCCCTTGGAACAGCAATGCTGAACCTAACTCTTCCAGGACAACACCCTGACCCGGAAGCTGTTGCTCGAGAAGTTCATAGGAAGGTTAATGTTTCAATTTCAAGAAGGGAAATGCTGTCACTGTCACAGGAAGATGAGTCCTCGTGCCTAACAGGGAACCCCATTGACGATTGCTGGAAATGTGACCGTGATTGGCCAAACAATCGCCAGAGGCTAGCTGATTGCGCCATTGGGTTTGGGCAGTATGCAAAAGGAGGAAAGGGTGGTGAGTTCTACATTGTAACTGATTCTTCAGATGATGATGCTGTTAACCCAAAACCTGGGACTTTGAGATATGCTGTGATTCAGAATGAGCCACTTTGGATCGTGTTCCCAAGTAACATGATGATTAAGCTGTCACAGGAGCTGATATTCAACAGTTATAAGACCCTTGATGGGCGTGGTGCTGATGTGCACATTGTGGGTGGAGGGTGCATTACTCTGCAGTATATAAGCAATGTCATCATACATAACATTCACGTCCACCATTGTCATCCCTCGGGGAACACAAACGTGCGGTCAAGCCCGGACCACTACGGGTACCGCACGCTGTCGGACGGCGACGGCATCTCCATCTTCGGCTCGAAAGACATATGGATCGACCACTGCACCCTGTCCCGGTGCAAGGACGGGCTGATAGACGCCGTGATGGGCTCGACAGGCATAACAATCTCGAACAACTTCTTCTCCCACCACAACGAGGTCATGCTCCTGGGCCACAGCGACGACTACCTGCCAGACTCGGGCATGCAGGTTACCATCGCGTTCAACCACTTCGGGGAGAAGCTGGTGCAGCGCATGCCCCGGTGCCGCAGAGGGTACATCCACGTGGTGAACAACGACTTCACGGAGTGGGAGATGTATGCGATTGGAGGGAGTGGGGAGCCAACGATAAACAGCCAGGGGAACAGGTACATGGCGCCCACGAACCCCTTCGCGAAGGAGGTGACCAAGAGGGTGGACACTGCGGAGGGGAAGTGGAAGGGGTGGAACTGGAGGTCTGAGGGGGATGTTATGGTCAATGGGGCCTTCTTTGTGGCGTCTGGGGAAGGTGTTGAGGTCAAGTATGAGAAGGCTTTCAGTGTTGAGCCCAAGTCTGCTGATCGGATTTCCCAGCTCACCATGTCTGCTGGCGTTCTAGGTGTTGCCAAGGACAACAATCTAGGAATGTGGAGCAGAGGACCCGACGGAGAGAGCGATGGCATTTCAGGGTATGGCCCGGAATACACGGACGACATGTCGCCTAGTACAAGGGTGGTGCTGCCACCTTCCCCAACTTTTACTCTTGTGCCGTCTATTCTGTTGTTGTTCATGTTGTCTTACACAATAGTAATACCATTAACGGTTATTCTATAA 1446 0.5214 MLRKTCVLLISILGSILPLGTAMLNLTLPGQHPDPEAVAREVHRKVNVSISRREMLSLSQEDESSCLTGNPIDDCWKCDRDWPNNRQRLADCAIGFGQYAKGGKGGEFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPDHYGYRTLSDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYMAPTNPFAKEVTKRVDTAEGKWKGWNWRSEGDVMVNGAFFVASGEGVEVKYEKAFSVEPKSADRISQLTMSAGVLGVAKDNNLGMWSRGPDGESDGISGYGPEYTDDMSPSTRVVLPPSPTFTLVPSILLLFMLSYTIVIPLTVIL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2772 481 SMART amb_all 144 341 IPR002022 -
Dod01g2772 481 Pfam Pectate lyase 154 329 IPR002022 -
Dod01g2772 481 Gene3D - 69 411 IPR012334 -
Dod01g2772 481 PANTHER PECTATE LYASE 18-RELATED 1 428 IPR045032 GO:0030570
Dod01g2772 481 PANTHER PECTATE LYASE 12-RELATED 1 428 - -
Dod01g2772 481 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Dod01g2772 481 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Dod01g2772 481 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Dod01g2772 481 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Dod01g2772 481 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Dod01g2772 481 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Dod01g2772 481 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Dod01g2772 481 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Dod01g2772 481 SUPERFAMILY Pectin lyase-like 61 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2772 Dod-Chr1 67562742 67567750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2772 1 478 Polysaccharide Lyase AT3G53190 72.521 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2772 K01728 - gmx:100775595 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2772 01 67562742 67567750 Dod07g0124 07 1483916 1488721 PCT