Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2763 ATGGCCAGTCCCTTCGACCACCAAATTGCACCGCCACCCTTCACCGGAACCGCAGCCGATTTCGGACTCAGCGATGACGACGAAACAACCGAAGAAGAAGAAGAAGAAGACGAAGACGACGAGGAAGAGGAGGACGAAGAGCACTCGCCTAGGGCTCTGCGTGAAGGTCCTTCCACCACCTCTTATCAACCAATCGTTGTTATCCCCGACGACTCCCCGAACACCGTCGAAGAAGAAGAACAAGACGACGGAAACAACAAGCGCCGCAGAATCGAAGGCGGAGAAGCTTCGTGTTCGTCGCTGGGAAATGACGGCGGCAGCCAAGGCAACGAGTGGAACCGCACCGACATTGACGGTCTCTTTTGCCCTATTTGCATGGAAGCTTGGACCACTAACGGCGACCACCATATTTGCTGTCTTCCTTGTGGACACATATATGGTATGTCTTGCATCAAGAGATGGCTTCAACAACGAAAAAGTTCTGGGAAGTGTCCTCAATGCAACAGAAAATGTTCATTAAGGGATGTGAGGAAGCTCTATGCCTCCCGAGTAGTAACTGTCGATGAAGAATCTCAGAAGAAAATTCGGTCACTTGAGGCCAAATGTGCTGCCTTCGAAAGTAAGGGTGCTGATTGGCACAAGAAAGAAGCTGGATGGCAGAAGAGAGAAGCTGCATTGCATCTTGAAGTTCAGAAGCTTACAGAGAGCACAATCTTCGGCTTGAAGTCCCATGGAAAAGGATCTTTTGGCAATTTTGAGTTACAGCAAACGTTCCATTTGGATGGTGCACGGGTCTTTGATATGGATGCTTCTAATCAAATTTTATTAATTGCACAAAAGCCAAGAGGGATTGGTGGAATGCACTTCATAACTAAAATGAGCTTGATACCTCCGTTTGAAATGGAAGATATCTTACTGCCTTCCACTACAAATGCTATTAGAGATATACATATTTCTCCATCTAATAGTAGCCTGGCCCTCTATGCTTCAACAGGGAAGAAGTTATCAGTGCTCAGGTATGCCTGTGTTAACATTATATTTCAGGATCCTGCTTGGTCATGTTCATGGGATCTCAACAGTTCGCATTACATGTATGCTGGACTTCAGAATGGCTCTGTCTTGGTGTTTGATATGCGACAAACCGCGGGGCCCATGAAGTCTTTAATTGGGATGACTAACAACCCTGTTCATACTGTACACTCTCTTGCTCAAACTTCAAGTCTTCCTTCTGGTGTTAACACCATCTTATCTGCGTCTGCTATTGGCCTTTGTCAGTGGAATGTTGATTCTGAAGAACGGCCATTTGTGGTTCCTGAAACTGATAATCAAGGAGTTTGTATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGTTTCATACCGTCCGAAATTTGACATGTCGATGGATGTGCTGCTTTCTCAAACATCTCCCACTCCTTCTCAAGTTATTGGACAAGGAGTACAAGGCTCTCATGTCTTGTTGAAGAGGCAAGGCAGTGATAATTTCCAAAAGATGGGTTCCTCATATGCCAATCTAAGTAAAATTCGTCTACCTAAATGTGTAATTATAGACATACAGAATCAAAGCAGATTGTTTGCAGGCCGGAGATGA 1617 0.4539 MASPFDHQIAPPPFTGTAADFGLSDDDETTEEEEEEDEDDEEEEDEEHSPRALREGPSTTSYQPIVVIPDDSPNTVEEEEQDDGNNKRRRIEGGEASCSSLGNDGGSQGNEWNRTDIDGLFCPICMEAWTTNGDHHICCLPCGHIYGMSCIKRWLQQRKSSGKCPQCNRKCSLRDVRKLYASRVVTVDEESQKKIRSLEAKCAAFESKGADWHKKEAGWQKREAALHLEVQKLTESTIFGLKSHGKGSFGNFELQQTFHLDGARVFDMDASNQILLIAQKPRGIGGMHFITKMSLIPPFEMEDILLPSTTNAIRDIHISPSNSSLALYASTGKKLSVLRYACVNIIFQDPAWSCSWDLNSSHYMYAGLQNGSVLVFDMRQTAGPMKSLIGMTNNPVHTVHSLAQTSSLPSGVNTILSASAIGLCQWNVDSEERPFVVPETDNQGVCISLAYCPSSDDIVVSYRPKFDMSMDVLLSQTSPTPSQVIGQGVQGSHVLLKRQGSDNFQKMGSSYANLSKIRLPKCVIIDIQNQSRLFAGRR* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2763 538 SUPERFAMILY WD40 repeat-like 249 461 IPR036322 GO:0005515
Dod01g2763 538 Gene3D - 262 471 IPR015943 GO:0005515
Dod01g2763 538 ProSiteProfiles Zinc finger RING-type profile. 122 168 IPR001841 -
Dod01g2763 538 PANTHER RFWD3 PROTEIN 26 535 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Dod01g2763 538 MobiDBLite consensus disorder prediction 80 94 - -
Dod01g2763 538 MobiDBLite consensus disorder prediction 1 110 - -
Dod01g2763 538 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 26 535 - -
Dod01g2763 538 MobiDBLite consensus disorder prediction 24 46 - -
Dod01g2763 538 Coils Coil 188 208 - -
Dod01g2763 538 SMART ring_2 122 167 IPR001841 -
Dod01g2763 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 231 IPR013083 -
Dod01g2763 538 Pfam Ring finger domain 122 168 IPR001841 -
Dod01g2763 538 CDD mRING-C3HGC3_RFWD3 118 168 - -
Dod01g2763 538 SUPERFAMILY RING/U-box 113 173 - -
Dod01g2763 538 MobiDBLite consensus disorder prediction 54 68 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2763 121 173 C3H Transcription Factor Family AT1G51930 42.593 8.70e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2763 K15691 - gmx:100818898 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2763 01 67450588 67456294 Dod01g2763 01 67450588 67456294 ECH